jgi.p|Nanoce1779_2|625144, gene_3693 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625144
Unique Namegene_3693
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:990012..994515 -

Link to JBrowse

Properties
Property NameValue
TranscriptId625230
ProteinId625144
Product nameHydroxymethylglutaryl-coenzyme A synthase N terminal-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:990012..994515 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004421hydroxymethylglutaryl-CoA synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0008299isoprenoid biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03590NO08G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625144mRNA_3693-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625144mRNA_3693Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|625144

>mRNA_3693-protein ID=mRNA_3693-protein|Name=jgi.p|Nanoce1779_2|625144|organism=Nannochloropsis oceanica|type=polypeptide|length=1044bp
MGLEDAMETLARALLEGAGMATPAAAEWARPLLIGGIVTLLFVIVAVSRR
LVHGSRPDNVGILATEIYFPSTYVRQTLLERAHGVSQGKFTSGLGQAGMA
FVGDREDINSIALTVVENLLSKYDIPREKVGRLEVGTETLVDRAKSTKTV
LMSLFEASGNTDIEGTTVVNACYGGTAALLNALAWVESSGWDGRYAIVVC
ADIAMYADGPAKPTGGCGAVALLVGPDAPLVIDSKLRATHASNTWDFFKP
KFASEYPEVDGKMSKECYLRALDDCYLRFAGKQEEAFGKPFCADEIDYFC
FHHPYNKLVQKAFGRLFYMDTRRGKLKKTVGEGWGSLDPWAATPLEETYD
DRDLESLLRGLSHDRFSKRVGPSCLVSMQVGNTYTASVYMNLVCLIALKA
QELVGKRMLVYSFGSGALATMFQITGRQPSSSVNSGRFTLGKMASTINLM
DRLLERETVTPEELSEAIRIREKNVNRGGFVPQYSVSSLFPGTFYLEEVR
PDFTRVYLRKLPTAPRIKGLFYPVHGSSKVIMVEKVLTTLKDRLVITGVA
AGLPGKDRDVFSGTNLEDLVNGTNFITNLSEVTKMNLIEKNVVQLKKNLD
GTTTKMAVDSEKKVIKLGAQLGRFDLTTYGVSKAMVATMDTVVQVAIAAG
LEALKDAGIVKGEGKDLSSWQLPEHMRDSTGVVYATSFPALEAAVSEDPD
AEYEFDRKFLFRILVLGNAQLAQIVGARGPNMQTNAACAGTTQAIAIGQD
MIQQGRCERLVVIASDNASGDVLIPWLGSGFRALGAASISENVEDAALPF
DKRRKGLVLGAGAIGMVLETEAAVARSGGNLGASVVMSKEHIEAFGLALR
IRLIDTQYSNSAYHGAALDQHHIAGELARFLGSLEKKFGITRQQIAEEGV
YLSHETSTHASDASSCAANEIFALRTCFGDAGMEKLIVLNTKGYTGHPMG
VSFEDVAAVQILRSGIIPPVANLDEKHTDPYLGKINLGKGGKFNARYALR
FAAGFGSQVAFALYGHLGGGGQEEGEGGYYAGVHAGTHAGAQP*
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Synonyms
Publications