jgi.p|Nanoce1779_2|663291, gene_3617 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|663291
Unique Namegene_3617
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:782742..785488 +

Link to JBrowse

Properties
Property NameValue
TranscriptId663377
ProteinId663291
Product nameGlutamyl-tRNA synthetase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:782742..785488 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009332glutamate-tRNA ligase complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0004818glutamate-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006412translation
GO:0006424glutamyl-tRNA aminoacylation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02860NO08G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663291mRNA_3617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663291mRNA_3617Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|663291

>mRNA_3617-protein ID=mRNA_3617-protein|Name=jgi.p|Nanoce1779_2|663291|organism=Nannochloropsis oceanica|type=polypeptide|length=859bp
MVTAESISAAILTKGNEIKELKASSIFSKEALKPLIDELLALKTAFKEAN
GGVPYENPADPNKKKEKEPKPQQPAEKTGPSKKDLQKAAKKEKKAAAKAE
AAASTMTTTASSKTGGLLPNPTMAKPTLEGETVFFSLDRPPVVTYATVLL
TKSAVKFVPHPPTQSDGASLEPQLFLMDGTSLFGDLSIARFLARRSPLPE
HQALIGGGAAGGNDALLASEVDQWLDFVQQYHMALAPAEAASVCSNLNAV
LELRTFLVGYSMTLADAAVYVFLQVNKFMGHVAGLPHLSRWFDLVMARAP
EVATAHNKILAMRGKVAKGGEGNGNLGGGDTGSCPPLEGAVVGEVVTRFP
PEPSGFLHIGHAKAVLLNDFYARHYKGRLIVRFDDTNPSKEKDEYEDSIV
QDLASLGVVGDIVSHTSDYFQLLEDMARKLVEEGKAYMDNTPQEKMQEER
LNRVESVHRNNSVEENLKRFEAMLAGDREFCMRVKIDMTSVNGTMRDPVL
YRANPQPHHRTGTKFRAYPTYDFACPVVDSLEGVTHALRTTEYNDRDEQY
YFLQDLMGLRRVKIQSYSRLNFVQTELSKRKLTWFVEQGLVEGWNDPRFP
TIQGVMRRGVSIEALRAFILSQGASRRNVLMEWDAFWSINKKGYEHSSAR
YMAVFAESCVPLEVSNGPKGVEGITIPLHPKRPELGSRVLRLANRVLLEG
QDADGLVEGEEITLLRWGNVQIVSVERDAGGKVVGAKAEHVPDGDPKATK
LKLTWLADVEDKVPVVLTEFDYLITKKKLEEGEDFKMFLNPVTKAESMGW
GDPALRNLKQGEVVQLERRGFYICDRPYMGPEKGVVLFMVPDGRSKAMST
LSGALKHV*
back to top
Synonyms
Publications