jgi.p|Nanoce1779_2|582649, gene_3570 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582649
Unique Namegene_3570
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:681480..684861 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582735
ProteinId582649
Product nameGlycoside hydrolase superfamily
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:681480..684861 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008810cellulase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02410NO08G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582649mRNA_3570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582649mRNA_3570Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582649

>mRNA_3570-protein ID=mRNA_3570-protein|Name=jgi.p|Nanoce1779_2|582649|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MSSAGRAKALIYSLIGVSVVAGVTVALLGIFGNDIFPNKDAGGNWEDPKL
SYVKTPSLDQLRASFAPDTCFDTYDLTWTSGKDGQIYANTAPFFVKGMSW
FGCEGHGYTFTGLNFTSMDTILNFFVQHKFNTVRIPVSVAFALAPKDTKP
NQRFVGKSLKGKTIWEILGEAIDQAALRGLMVMLDMHTLGPQEPSDLWYD
EQYQEADVLQAWTNIMSAYSAKWNVFALDLKNEPHGIATWGVKAPLTDYN
KFYERSITHIHAKFPDWKGLYLVEGVQFNKETDKATDYPFWWGGNFGGAV
NHPIKVPYPDVMDRVVYSPHVYGPDVYDHPYMNVPAEDLPKELVKVWDSQ
MGWLIPKLQKGMIIGEWGGSLKGRDDIVQRTLAKWLVKNCMANNVWWAIN
PESSDTGGIMSWNWKTYDKNRLDLVDSIFPDPTRFGIKRSKLCLHLGTYP
NPECPIQPFKKPEIAQPEKLRA*
back to top
Synonyms
Publications