jgi.p|Nanoce1779_2|582270, gene_3473 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582270
Unique Namegene_3473
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:436474..440868 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582356
ProteinId582270
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:436474..440868 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01460NO08G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582270mRNA_3473-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582270mRNA_3473Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582270

>mRNA_3473-protein ID=mRNA_3473-protein|Name=jgi.p|Nanoce1779_2|582270|organism=Nannochloropsis oceanica|type=polypeptide|length=1125bp
MVQTEPSPLIGTSVSLTLPAVDPAAPSSSTPPIAPTSSGMAIGETKLLPT
MSHAMANGVCHVEDKHEQKGQERQVQQLSAVVAAAALAAAAKRQHKNQQQ
LQRQQRAQKQEEDKEEEVVYGRGKRKIKHLTVTINGDQVKVANNYTVTGA
HYVYDNSRTGAYYRPSVRKQGQKKKPATDAPPRILNPILRALQERNHKVA
AQKAITDARRDTFLRGHLSGLRPFISDEVATRLASVAVKPTEPGATMAAT
AGGGGSDRGGNRSAKKEDGPPKLSKQPSCIVGTELRDYQLQGLNFLLDRH
HHGVPMILGDEMGLGKTLQSLSFLAYLRFELGIVGPALVVCPLSVLSSWM
NEAKKWCPQLRVVQLHTSDITERKRQCREILPRGDYDVCVTTYDMVKNPV
ARHALLRQIRWSTLVLDEGHIVKAETTEIAQTVRKIHFGNVLLLTGTPLQ
NNLHELWSLLNFLMPDIFDEDSGAIFDSSFDWKKKTVDPQRLQKAHALLQ
VFMLRRLKVDVEKGLPPRVETKVYCPLSEMQLFYYKLLLLKDADVVARLE
ADNRAGGGKEGGKNQHSVSGTDWKRMQMLMTQLRKASSHPFLFKGAEGET
EATVDEMVEASGKLQTLDRLLVKLKKAGHRCVIFSQWKHTLDILDDFLRG
RGYRYTRLDGATNRIRRIINIDAFNAPESPLFAFLMTTRAGGLGVNLQTA
DTVILFDSDWNPQPDLQAMARVHRIGQKKCVHVYRLISFGTIEERILEHA
EKKLFLAEHVNRDSLAGKETSSDPTAAEMGNGEKNGGGEVEKGRGKGRPG
VDPVPEDLDSESILAHLTFGSDAVAHLEGNELLDDASLDMLIDRTRGIGE
DKKSTVGGVKKEGGVAGRKNQITNAKKDAATFDATVELTNTRVLQGVMYE
SISRPISSLNDIAAEWATQNEKRKREQRVVMVQGLGTGYGMAAVPVLKDN
DYDLGGGETSVFDRELKGRAAIMAYQDKKRFVLTAGRDFQHEDSCANCWD
GGEIVLCSHCPSGYHFSCLGLGKGKKNNLPALWSCPQHRCAECNRNATAA
GGVIFRCLACPSSFCYDHKPQEAVIVAHNPRFEALGYPDAQHTAFVLCSP
DCAQFYEVFIKKLPPPEASIYPMD*
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Synonyms
Publications