jgi.p|Nanoce1779_2|539281, gene_3450 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539281
Unique Namegene_3450
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:355499..358785 -

Link to JBrowse

Properties
Property NameValue
TranscriptId539367
ProteinId539281
Product nameimidazole glycerol phosphate synthase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:355499..358785 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016763transferase activity, transferring pentosyl groups
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0000105histidine biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01210NO08G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539281mRNA_3450-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539281mRNA_3450Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|539281

>mRNA_3450-protein ID=mRNA_3450-protein|Name=jgi.p|Nanoce1779_2|539281|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MCPITLHTHARHTNTQASMSTAPGASSSSSASPSSSSTTPGAPRRPVVSL
LDYGAGNVRSVRNAITALGYEVHDVSSPGEIDAAEVIVFPGVGSFGSAME
VLNTKGFTQPLREYISADRPFFGICLGMQTLFEASEECPGVAGLGIIKGT
IKHFDPSASLSVPHIGWNGLLMQKQTKLIRALRPQELVYFVHSYRAMPSP
EAAPWALTLTTYGTNFISAVQQGRVVATQFHPEKSGSTGLRILQTFLENI
EVEANDGLWRPIAETRVSKRVIACLDVRSNDEGDLVVTKGDQYDVREAPA
AAEDATATAATAATAATARGAVRNLGKPVALARRYYDEGADEITFLNITS
FRQGVLDDLPMLQVLEKASEQVFVPLTVGGGIRGYTEEGEGGKAWTAVEV
AARYFRAGADKVSIGSDAVTAAEEVVARHGKRTGLSAIEQISGRYGRQAV
VVSIDPRRVYLSSPDACPAGHTPVELPEPAGPNKEKWCWYQATIKGGREG
RPIDAVRLAHICAELGAGEILLNCVDMDGQCKGFDLALIRAVRAAVTIPV
IASSGAGCPRHFSEVFNRTGVEAALAAGIFHRREVEISAVKSHLKEVGIP
VRVALPPPGIGEGSQLGGMDF*
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Synonyms
Publications