jgi.p|Nanoce1779_2|582003, gene_3402 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582003
Unique Namegene_3402
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:224898..230396 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582089
ProteinId582003
Product namethe 70-Kda heat shock cognate protein from rattus Norvegicus in post-Atp hydrolysis state
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:224898..230396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00730NO08G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582003mRNA_3402-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582003mRNA_3402Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|582003

>mRNA_3402-protein ID=mRNA_3402-protein|Name=jgi.p|Nanoce1779_2|582003|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MADTRAGLCRGVGLALSLTILVLLLDISLASVLGGGPWGMPTRATTRATS
PFSNHRGWEDKMSTLQRLVSRTRGGASNEKDKDSKIQGPCIGIDLGTTYS
CVAVWQNGRVEICANDQGNRITPSYVSFTEDEQRLIGEASKNQAAQNPTN
TVYDAKRLIGRKFEDPTVQRDLKLVSYKVVNKGGKPAVEVKVKGQAKVFT
PEELSAMVLTKMKETAEAYLGQEVKHAVITVPAYFNDAQRQATKDAGTIA
GLKVERVINEPTAAAIAYGLDKADKGKEENILVFDLGGGTFDVTLLTIDS
GVFEVRSTNGDTHLGGEDFDQRLMDYVITSFKRKHKVDVSQDKRALARVR
RECEKAKRALSVQTQTNIEIEALAQGIDLSLPISRAKFEELNLDLFKRTL
APVAQVLKDAGMSKEEIDQVVLVGGSTRIPKVQQLLSDFFNGKELNKGIN
PDEAVAYGAAVQGAILSGAAADATKDIVLLDVAPLSLGIETVGGVMTKVV
ERGTTIPACKKQVFTTYSDNQNSVLIQVYEGERTMTKDNRLLGKFELSGI
PGGPRGGPQIEVAFDVDASGILQVSAVEKNSGKTQTITITSEKGRLSEDE
IERMVKEAEEFAEQDKKEKERVDARWVAGEGASYV*
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Synonyms
Publications