jgi.p|Nanoce1779_2|637672, gene_3340 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637672
Unique Namegene_3340
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:53937..61328 +

Link to JBrowse

Properties
Property NameValue
TranscriptId637758
ProteinId637672
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:53937..61328 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006013mannose metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0015923mannosidase activity
GO:0003824catalytic activity
GO:0030246carbohydrate binding
GO:0004559alpha-mannosidase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00190NO08G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637672mRNA_3340-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637672mRNA_3340Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|637672

>mRNA_3340-protein ID=mRNA_3340-protein|Name=jgi.p|Nanoce1779_2|637672|organism=Nannochloropsis oceanica|type=polypeptide|length=1205bp
MTPLLLGLLGGTLLSSTHTTVTAASAAMATTSSVRPVHDQWPPIYNTDDT
KLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQHAGVQYILDSVTDSLIAD
PGRKFTYVEQAFFSRWWYEQTPKKKAQVRRLVEEERLVFTNGGWCMHDEA
TAHYVGMIDQTTLGHRFLAATFGAKHLPRVGWQVDPFGHSSTQASLLSGS
VGFEALYFGRIDYQDMKERKGKQQLEFIWDASPSLGSDAAIFTGVFPSGN
YGPPRGFCFDQFCADEPMNDDVNLVDENTERRVEEFVAAVRELKKFYPGK
NIMLQMGSDFQFENANTWYKNLDKLIHYVNKDGRLNVFYSTPIEYTEARH
REQLAFITKEDDFFPYSDGPHQYWTGYFSSRSSLKRFERVASGYLQVARQ
LQALAALLPISSSSSSSSSSPSLFPLEEASAIMQHHDGVSGTSKQHVAYD
YAQRMDKGYAEAQSVAADAMAALLRHAHHQTEGKKSASPPPLPPPLSGSA
LHQCKLLNESSCDVVVRATRANQDVLVLAYNPLAHARGPAVVRLPVSSPH
LHVYRSDALRDPLPSDVLEGEKNDTFLLVFQTDSLPPLGVGSYILKSHLD
NDSSSSNSSSSSSNSSNSSNSSSTTNISLISSSSSSSQTKADKHSRQLSP
SSSSSSSSSSSSSSSSSSSSSSSSSSSSEEEEEEEDGIVVVENAFIRLLY
STSTGRLTSLQRKDTNLQMNVTQDLLYYHSFNGSSGVNTTGMDEETKRGV
IQAGGAYIFRPEADQSLYPINAGAVEIEIFKGDVVTEIRQTWSPWASLTS
RLYAGSRSLEVEWSVGPIPVEEDGVGKEVIARFQTDVGSGDRTIAPRGTR
PSTSPWPATTTPVTAAAFLLDTKAGTEAGTEGGTVGGTEDRAKRRQFSVV
VDRSQGVASLASGQLDVLLQRRLLFDDHRGVGEPLNETTGGIEHGGAHAR
QGGGVVVSGQHQLLLGMGGKEGLRELRTKMEEEFLPPALFFSTHADFLAS
SSLLSSSSSPSSASSVPLSSFSGSELPPSLSLMTLQKISCRGRGERWTTL
PVEVEEEEGKEEGTEGGGEARFILRLAHQFAVGEDQELSQPVTVDLASLF
PHHTLASSVELTLSAGQPKSQLSRLAWQTTHGQAMAGREGGKEGGKEDGR
MVTLNPMEIRTFEVALKWRKEEEEEEEEEVGREVGKEEGEVQKWIGPGNL
MEMM*
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Synonyms
Publications