jgi.p|Nanoce1779_2|670060, gene_3316 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670060
Unique Name	gene_3316
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_7:1185798..1194065 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670146
ProteinId	670060
Product name	Armadillo-type fold
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1185798..1194065 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016070	RNA metabolic process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL092	ncniL092	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04980	NO05G04980	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670060	mRNA_3316-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670060	mRNA_3316	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|670060

>mRNA_3316-protein ID=mRNA_3316-protein|Name=jgi.p|Nanoce1779_2|670060|organism=Nannochloropsis oceanica|type=polypeptide|length=1397bp
MYNSNLPGPRAVESFKGCKKAAMIKVGEPLAVAMEPAKNGANAATVMAAV
VVEAHASLAAGRRKPARTFPAEERAAAQQKQRDDDAEAAAAKAAAMQKRK
EEEEARRKEQEKEVQLAAIKQLEEMEKAEEARAALRLQNAPAAVRVSRAE
HEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSEL
VQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGRE
GGREGGGPAAGEDAKEAGRRKRQVLRLLIELYLDNSTTGGGGGGGGGGRS
LSFSEEGGKRERASNGSSRVDGPLFVTLVRYGGEALLGMVPRKTKALHLT
AKSATAPIPSPFLADLLPSQMQEELRSLALKAFESLSTQLVAVHKHKTEL
ERRSEKDTLLYGALSEDKELALEEARKGCESFVKNMQEDEGEMEGAGGGG
LSLWDGDMGAKALGPYDDEDSRLFYEDLPDLLATLPAAMLGLTEEEAAKL
RQDKEAKEEEAALSGVVELAVAEGGLGKPNRRVDQMDVIVEEGGVEGEGE
EEEEEEEEGDDNDEDRPRLKEEGEGGEEEGEEEGLTSAHHKINHLLHEVL
PLCYHQERSDDFAWQFAPFLRHKRIQKRLLAILFSVPWQNLDLLPQYSRI
VATLSPVLPDLGPSLVRELQREFRYFMTKRPNTHLDMKLKTVKYIGELVK
FKVCPPIVPLSCTKVCLEAFSRHHVEHYLDVMMKLKRAKNVDPNLEVLIN
NAYLICNPPSDRRRLHNDLVLLPPLHAYIRSLLFQRLTAKTVDDVIRLLR
KLPWKAKGGTEEGIAAAAGGEGGKEGGELEAFFLRAVLQGAKGKFHALHL
FADVLAGLSKYHEAMCVRLVDELLEELKRGLETAGGRRERDTQGHLALSG
LLGELYNYSLVPHALIFDTLYLFLNYGHEVPRPLPSSLPPSFPPYVTHDP
RVLTPLDPPGDTFRTQLVIVLLQATGHFLASSTGKIKMKKSLNTFLIYFQ
RYLFCRGYVPPDTENDVLDLLDLLEGLGGEGGGESVPRYATWEEAQAEVD
RMEREEWERKGGGREGEGGKEGRKVGGDVAQGGQKEGEDDESISSDGSSS
SSSSSSSSSSGSDSDSDEEGQETEPPEDEEDEEEDEEEDEEEEEAVAVHR
RMPQKTEEDMEMEAEFEKAFAGMVMHSMEERKTSARAGATSLAADNMILP
STLPKVSRRGGRGGEGEEEEEEGTERGGGWGAKSGAGGGEGGGGGGGGVT
FRMLKRGNRGRLEARELMVPDYTSLATTIRTHRDAEKEEHDRLKQRVLQY
ETMVEEGEGGDEGWMGAESVDLEKVHNRPLTEGEKARLTALAARRREQRS
RRGRGGGVGSGAGGGGSTGGGAGGGRGSAQPPLQFYERGFFNRSSS*

Synonyms

Publications