jgi.p|Nanoce1779_2|668383, gene_330 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668383
Unique Namegene_330
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:815382..819263 +

Link to JBrowse

Properties
Property NameValue
TranscriptId668469
ProteinId668383
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:815382..819263 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004767sphingomyelin phosphodiesterase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668383mRNA_330-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668383mRNA_330Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|668383

>mRNA_330-protein ID=mRNA_330-protein|Name=jgi.p|Nanoce1779_2|668383|organism=Nannochloropsis oceanica|type=polypeptide|length=897bp
MGHYALETQAHTPHHFLYRRIALYRGKRSRTPSLASLVCIVIIIMNSMSS
KTTTKKTAIPARDPLSPLIKAALSSSKESDLKEACDVLGRELAQPGGATY
FSFLDRCFGMHGQPSTRMRIDGGWVSKSSKPERVVTLLTSENRLKWDNAY
RMLASFSKHDPGFALDVEMLPVRTEEYLRGDPPADVERLATDNSKRLYEF
FFFARTRPHAPPTAPTTSSSSSSGSSNSASEPRTTKAGFTRLPFIVPHLD
YYHFIFAYHAVYPKIGINTPVSLAYQQDLASGAITPTGLLETARKAHNAY
LDLLQAYIYTYFPRTSTPQFESKNNTLDPIKALALPEDSEKFLRILIEMW
LERNPCLNPNTKIHPDTSDAENQFYPNIPTQPSLRYEEPSFQVLQALLVL
LPHLLARKVEVELVAQTHGPRVSRAATIPAFCAALDALQQPMFTFLSMAF
RRLPLEGGGWTKFLMVVEIWLAWVTPDAQLARAFADRKGQGEAALVFRWR
ETFLKAYVVSNFHFYTTILMLFMRKAREALGADAAKQPVILLQLHRVLEA
FNRTGLRDTLGDVSKSAGELWANGNQMRGRTHMLHHLQRLRLMRSKPCLV
GNAAQDAHYLAAELLASRKRTIRTMKEQARKWTAMVPKSVKKVWFWIWEM
VMVYFYHLLDWGERRGGMGVGTMGLSGVGGAGGGEVGGLAGLVLQIDAVL
EEVYGIFPSVQAKCQRPLADEQALDAQLRDAERRGLLLTSEGREQLLSGQ
RACDPMKAAYIGDPLFDPVLKSNEYGALLPWAQQASVWLSKWWNPEYATW
CAVREEEKKEEGKEREGAKQGRVTATVGKDWGHMLVKETEGIEITPISLR
FCIGGCCVNSVVILLAMFVVWVVLSWTTAHKLLLQKVAMEQLQQKG*
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Synonyms
Publications