jgi.p|Nanoce1779_2|395973, gene_3060 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|395973
Unique Name	gene_3060
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_7:571373..576854 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	396059
ProteinId	395973
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:571373..576854 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL092	ncniL092	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02590	NO05G02590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|395973	mRNA_3060-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|395973	mRNA_3060	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|395973

>mRNA_3060-protein ID=mRNA_3060-protein|Name=jgi.p|Nanoce1779_2|395973|organism=Nannochloropsis oceanica|type=polypeptide|length=1510bp
MIRRRFLGVSESKEVGTEKEAGASKLRQKHVMEELLSDFLEHEASTLLDT
LKAAGGKTTVAVNNFCGIMDRFDAALRRHPSMLMVTLVTCAKTDDLTTAV
RLLHEALRHVLLVDPWGDKLVATYLRNLPIGRAAQARPYLTRLNVLLLDT
LSRLFAMALREGWPTSLSIPEDVAAHLPATLASLLRFSSLPYSRLMLDGA
LDIYKAIARDAVPAISKKMTTTTTTANSSDSNSGNSNEIMLVGATATASA
HSKALVEMGERLERATFRSMAGVLCDPQLDPDFLQHYTNTNEARDYCRSA
LEHFVNLLDEDSDWAVAPARGVGALTDRQLRAVLQQLRNLAQLALQNSSL
YGTILFSCYLGLTFIVLQHPFLEAEVEAEAEEEVGLGLRPQQARLEWLVQ
MHEALAETGRCCSERGRFLRVMLKAIPPPVSGADKEEEGRAFDATVQCIR
CLHNLDLSPNGTAADHQAEGRAPEGLSETIGLATFVLRYLEEAEDTMHRK
KQLLTALAVAYNEEPALQKPEICSSLFPSIESYLLRGFVMIQPHVSAPLG
QDGDTESSVGKGVGGAGGQQGPSRLLALLKGNQEQVLTEAAMVTSAVHDQ
DESRNKGAPASARGRDLLHLDALKSKVGEAGAEGLLYVYTHLYAYVGELS
PVPKFSKRKGQSDSDAFMEYEAANLDLLQIHFLDLRFNPHRLEAWLGVAE
RAWSLYLMYLDHCSAVAAACGEADDGVNASSVIPHFERALRQSERRQEGI
KEEMGFSVQPFLDIAFFEDVTGTEQGARVCYALEEMGLKHLLTSSRRCIG
EEEMDLCWASAVVAAYRVLVERCLHVLDGILEYRLDLEPRDRELVTRRIE
ARVRLATISYMRHYESSTTADPNLSHHHQQQQEQESQEQQQQQQQQQQQQ
QQQQQKAALSQALTDMRAAQVMEERYMMRTRRWDIPFMIGKLLEKTGRAR
YGRQHSYAEIEEAEPGWLCSFLSHYRLAMELAEGSSSTGKMARKDALYRL
HASRLRALLSDRRDVNGVEEVAPPSARMLQVLRRYNSISKGGAKGGEETL
AADIDLSRLRWEMIMDAMGALATCRRLDSFDHRSIYQRARASEHLALFLP
LSVTGGGLESAPASAAAVASKWESERGLSKEMVKALAARTAEEREILSVK
AASGLMHLLFEKKRTQIVAVWLAEECSNVYELMNQRNLKYEATRRRYITY
YLALLQRTRDCDRLLDLHRNVRTLKDPTNYLLHWTQRHVLEYLITVLDQL
LLLHIPTISSSSNSRSSSSNENEVMKWLEMAYEVHLDLAEGIAAVSGRRR
GSLQRENIQVAQQRQALLAKLGGILLRAYEAAVVVPAAAAAAAVGNRVEG
GEAAEILPTSMSASTLEIALEYGHERWSEKQGRSKVARGPVGTAASPKGK
KRTLPCATPVVGPSSGSDSQQQQQSPGRRNGEGRGEDGGGGRGGNSPKRR
CVLHGSEDEEEKETRIDKVLQGHPSAPSSLPPSPPSNPSPTSRAEIIEVI
DDGDDEILV*

Synonyms

Publications