jgi.p|Nanoce1779_2|669724, gene_2871 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669724
Unique Name	gene_2871
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_7:132266..138035 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669810
ProteinId	669724
Product name	Transmembrane amino acid transporter protein-domain containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:132266..138035 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL092	ncniL092	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00800	NO05G00800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669724	mRNA_2871-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669724	mRNA_2871	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|669724

>mRNA_2871-protein ID=mRNA_2871-protein|Name=jgi.p|Nanoce1779_2|669724|organism=Nannochloropsis oceanica|type=polypeptide|length=1466bp
MAMAGSNSHKRARPSSSFSNLVNTTLPNDDSRSSRIAFPVSTSDSISSST
PIFVARKTLLGVVVLVTTASGNDDSSSTIDITTATAAPPSPASLPPRKVA
LVRTKQKEGRASFGRIIPFTRGAITRQKQASPRADPGRPAEDEERRAVCE
MSPDLPTFHTVMKAYAEERDPEGAEMVLGWLMTRGLLPDVVTYTTLMHAY
AGRGDARGAEEVMTRMTGSERLGKDEAVVPNVMTYTTLMSAYAAGGDVER
SEEVLERMEEACVAPNVMTFTTLMTAYTLRGDALGAEEVLKRMLSAFVAP
NANTYTTLLHAYTVNGDAAGAEKVLARMIAADVAPTSMTYATLMTVYAAK
GEVDAAEGVLIRMEAAGVESTAMAYDTLLNAYAVRKDVQGAEMVLTRREA
RGFHPFPLTYNTLMNAYAEEGDVKGAEEVLRRMGEEGVRPDGTTLSTLLH
AYAEAGDPLGAEAVLLRAQGKGGGREGEFEGVDLTVLMYNTLISAYAARR
DIKGAEQVLARLLEKNSDDDGEEEGKGQQQEQEKKVKNKLKPNSITYNAL
LTAYTNAGDMPGAQQVLKRMIGQGLAPDTFTFNTLIGAFVARRDVRAAEK
MVNYMVEHGVLADVVTYSQLLDGYATKVNDMESAEGVLERMEAEGVRPNL
YTYNYLIEGYVKAGEMEVAEGVLGRMRSGGLKPTSMNYCVLMDAYTRRRD
TRGAERILEKMRGDRVKPNVQVFTTLMNAYAKRGDVEGAEGVLARMVAGG
GGEAREGGREGGGSVNVCEPNVHTWSTLMNVYARAGLTNGAEGVLARMTA
AGLNPNVVTFTTLMTAYSRAGDPDGAELVLKRMEAAGASPNVLTYNTLLS
ATSRMGLREGEIEGRRAKRVLQIYDTMRRSAGTGQGLERTPDEATYTVLL
TCLLNFPKALALEVYKLVLQDWRKLVPVRNRSDRNYQSFISLLAAVGDWK
EMATVFGEAQARFQKGQLPPREFSRVEATFREKGGYFMREGEEEGKKGGG
GVVLPANKMAPQLQAKSRCAPTKPAFASTSVAGHSDAHHGLTISSLAINI
MADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACE
ATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALA
QALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYT
TAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISL
MNMACDRTLPRYASAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNY
HRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSV
DTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGV
VYIIPALLNTKLLARVKDMAAARPEKMFNQALIAVGVIFACLGAYAAIDD
QFGIFSGTGPKMHVH*

Synonyms

Publications