jgi.p|Nanoce1779_2|581409, gene_2756 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581409
Unique Namegene_2756
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:1109041..1112498 +

Link to JBrowse

Properties
Property NameValue
TranscriptId581495
ProteinId581409
Product nameGlycoside hydrolase superfamily
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1109041..1112498 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004567beta-mannosidase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581409mRNA_2756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581409mRNA_2756Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|581409

>mRNA_2756-protein ID=mRNA_2756-protein|Name=jgi.p|Nanoce1779_2|581409|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MAGQSKVKNVGIRTVRLVEEPVPGSEGLSFYFEVNGVPIFSKGANLIPLG
VFYNEADDEDIEWLLQSSVDANMNMLRIWGGGYYQPESFFNMADEKGLLI
WSEFMFACALYPRSTDFLALVEAEVTQQVRRHQSHPSIALWGGNNENEIA
LTWFKQSTDNRDLYVVDYVELYINTIHRVVHALDPARAWVDSSPANGVIA
EDPYIKRWGYPGDLTYGDLHHYDFYSDCELPASFPNARFVSEFGFQSLPS
FETYSKVLAPEDYNRKGDMLLFRQRHEGGNDQLEYMIDLHFKLPPAEASA
NQSQAKVFDDYIYLTQLQQSRCYDTAISSWRRHKATPARTMGALYWQLND
VWQGPTWSSIEYGGKWKPLHYALKKVFAPVLVSGYHDPATGTVNVHVTRC
PPLSLPPYFAIYLYSVQLCHLTHPPFLPPSISPATSSPPTAPRASCALAS
TPTRTAACP*
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Synonyms
Publications