jgi.p|Nanoce1779_2|628703, gene_2702 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628703
Unique Namegene_2702
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:972681..980237 +

Link to JBrowse

Properties
Property NameValue
TranscriptId628789
ProteinId628703
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:972681..980237 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03630NO07G03630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628703mRNA_2702-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628703mRNA_2702Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|628703

>mRNA_2702-protein ID=mRNA_2702-protein|Name=jgi.p|Nanoce1779_2|628703|organism=Nannochloropsis oceanica|type=polypeptide|length=2017bp
MAVRDANEEEELFVLPGARDAAAVCATTSAVRGKVEGAYSAGDRRSIAWI
QDDEEDVVEEENQEEDMDVSDWSGEEKEEDEEEEEEGEVGRRRSRGRHHV
PRMRQPSTRNNPPGASKKQREEARRGVTKEEAPAPRKRRRLYREGRRMVL
PENDDETTDIEVPDDFQAQIRIALPLPPSDTSTRALLLRRQSFYIPEAGS
CTGQPLAVTLIPATVFARRTFRVSPAEDMAALILEGDAVELLGVKDTEAL
AVLQDMCEASPPLAYYEVWKGGRKGAGQEYKAFHLTSKKLQEQQPLLQGG
GVEESKDRALGEEEEGEREGGEVRPVPGLKVILRRYQQDAVDWMICREKG
IDFFNTRPAAVDGLAPAPSSSDEGLAHGWVKVSLPICSFVYYNPVNVALS
VTRPPSSSWEPGNIKGGILADEMGLGKTIEVMALVLMHRKPEEEEGGREG
GREGGLVNEGCGEEDEREANQEEGGADMAEHVCPCGRDVRRNKEYMHWIN
CNQCKQWVHIHCAGFPTLAAAEAVPSYTCEVCHGLRRFQCPLPVSATLIV
TPQLICEQWEEEFKNRIQDGDAQLRVVTYRGVADTSRSDKWEERRLLNPD
VLGNEYDIVLTTFDVLTKDLGHTDSCFLPPSLAPSDAARTLRKRKKYRVT
PSPLASVIWWRVCLDEAQMIETSTASAAKMALRLKTVHRWCISGTPIWKG
QLDDLYGLLLFLQASPYDRRPWWRHAIQILHEKGDPAAASRLHALLSQIM
WRTSKKSVVDQLALPPQTERTKHLNFSHVEQAYYRTQYQECIDKVREVVA
RIKRLQQPQEGGRRGKKVTAALETCAAPLLRLRQACCHPQIGAGGLGGLR
QGKGVMTMMEIHEKLVEEEKLKCEEAQRLLLMHLSGLGAVARIQAEIWKK
EREGARKNSGERGGGEGRGSAENGKGKGKNKATMPVAEGGGASHLTGAPR
FGCKKGKEGGREGRREEEQQPVVSLWWEMEGERLVNFEKDVASVVGNAKG
KVSGKINDTSSSSSSSSYSWVASKQRPLWASVTFEGGNKKVIGLRFWPLE
EEGRREEKRVRMPGECRLLACSSPEGAVFVEVGVFDLRKVMPEEGREGGE
EGKGCRTIAGFNMFAAKTWKLEVLSVMGDVKEEREGGRVGARVEFLAAEI
EVDPLQILHVTTNLREVFEAMQGGGEGRGKTGDVRWLPLSERLAWLNTRT
RAVTRRECNLAKLLHCANRQHYLSAHQSVEGLQKEVGEVRREEGRWPITW
WEWTLGQLMRKGQVLDPKEELLRRLKTSSNKGGFPVFQGYDGLLMALKTR
MEDLEESRKKLKALLGTVLTDTPSEQEIKRNSTCGVCRKDWGKTGPACAI
CELDKHMTAYEGKLYTYRKKGNSQVSGLTAARAEAAAGTEVVVLPGGKKL
EVWKGAVSMNAYKDPCEAHQVLYTLLLPWLKKEAARRKDEDPMWGQVVGE
AMLESKRTELLERERKTARRFWNSGYNLLSKLDEVACSAIRMELAKEGED
MRHLSVDRRKVVVFPSEVGLKREEMGREVAMYESELSERKKQLQYLKNIA
HVEARAAAAAASARKAVMLEKEAAAAKSGGSGSSSNSNRSSGAGMEGEKE
NEKEGDEENGHECPVCFESLVEKPVMVLPCAHHFCEACLKGLMGQRSQNS
CPKCRRRFHRKDVARAEGVGGGGKEQEEEMVVMEEGAKAGEDEDEEDENE
DEEESCEVYGSWGTKITALVSEVLKLPGEDKCLIFSEWDEMLDLVQEALS
KNRVEFVRLKGERTAGKARRIFREEERVQCMLLNLKSGAKGLTLVEANHV
FLLEPVFNAATEAQAVNRVYRIGQTKPTFIHRFVVRGTIEEKVERMRQAK
IAAAGGESGVLSTVKKQGKTRRHDMELGVEEMEALFATVRRTTAAAVAAA
SALGGGAENNSTAAGNVVAGERGGEGGNGKRNGKSQRVLNMAQAGNRCLD
NKEMKKNEDGKKEAGQEETVVLVDDHEDEVGAVAELPGGGRRLGGGGGGG
SVGASRSVLLRHGSRK*
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Synonyms
Publications