jgi.p|Nanoce1779_2|580721, gene_2542 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580721
Unique Namegene_2542
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:605814..613779 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580807
ProteinId580721
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:605814..613779 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016443bidentate ribonuclease III activity
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003723RNA binding
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02160NO07G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580721mRNA_2542-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580721mRNA_2542Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|580721

>mRNA_2542-protein ID=mRNA_2542-protein|Name=jgi.p|Nanoce1779_2|580721|organism=Nannochloropsis oceanica|type=polypeptide|length=1870bp
MEEWDATASPRLELTGELSAERLRNYQQAALAKARRSNIIMCGAAGIGKT
HVALSLLREADYSEGQVAFFLATTRHLAQQQYQRIRNATSLSIKFCVGME
YDLWSKAQWQTVFRQNHVIVCTPQILLNVLTKGSEYMTVSRINLLVLDEC
HKAHRNHPYAQVMHHYERAEASGTRPRVFGMTATPSKLCHQILHCTLHIC
PLDDIKMFAAKAPLSVIQYQEEDHVTREKELLKAGQRLNSPIASFAIAEA
GRVDGDDIVYAMEDKGDFHQQGESLDHIGEDSESHHEEDSARHMALLDES
SGTEIATILEELKVCLPSVTKSKSLDLNMVRPNYNHVGSWFGVRHILLVL
DHWIGTTPFPRSERDVTEGIMARKLALYLRKVLPKVVQFQQFQLTDRAEK
MVQCLRQRREQDSENFRAIVFVQRRTTCRVLFEFLNLLEPFTGRCGFAIG
KATASGVPAFGLKRYQRQPIKDFTSGKIQVLVATDVLSEGIDVPECSLVV
AFDTVANPTAFVQMRGRARQHDGGAFVLFAPDRESLERIFQLEQGAAHFE
KEILDGNDIFILPRDVSLSRAFPQFSYSSSTTGALINLDNSIGFLNQICQ
WNKECMSYRLSPVTEIQEELSPRGQHMLYKCVLTLPAVFGFPSFESSLFP
AKAIARAVAAFHACVEFHRQGFVDDDLNPVRESVQLETYEHFIPEFAGVQ
AVNERVEMKTRAAAHLGLATMLGQGMQEAAIEDAHKLTTEKVEMAAATKE
TQTGVAADGALSSASPNTVEDIHPSVYYSYRMDEEISSVAVLTKTLLSED
ILEAEGLKPKPARMLKLTMAQMGLLNKFHVVLLHFVVHGPGAFKIEFAPL
LHIEDTPPRAAKKRNLANQIRRQSMQLITGDGEPGGDCDDNEDGGGEQAP
NTTTPPVSSTAEEGGSAIIEGDGGQSVTTSAGEGKEEESESLGKEKRGED
QDQEGATPLVVSMLGLEKRKKEKVENNKKRSSADSSEEDDEMLFCEHLEP
KAEFDKGYVLAPLNLDGDVDWDLVNALVQDAPSGKLLHGRGEFWPLPSED
PVTLCDSLLLTCSPLSSRPKLWAPVEMVVDQTLAEVREAAAAAAAARVKI
GADAKAQEKMTAKIEAPKKEDPEAQAKSAGGSEMDLEEDASLSFETSGNM
ERDREGIFARDKVRKRPKQGRENVDKDVEAGSEKVDNSGCDKKDVEMEEE
PEGGNSEEEDKKEEHKPRLHLFEYPVEVWDRCDQAQSLLLVEKIVDSPFT
FRMLALNGQIWKKGEEVEDVALSTDTPTCLRQNRHSSCRLLAPQLCSFIR
VPKRLYVACQRLLPKLWRLEIALKVACFIRDVGIPVQDHSVIRTALCKPD
YERLEVLGDVYLKLAMSCVVLRKEPYLLRESLLHDFRSNMICNRRLMQAA
LKRGIEGNIVLRMKVLNEPYRHWAPSLMAPLASTASEVNVKVVADVVEAL
IGAYLIDGGPRAADGFLQWLGFPVMCTTEACNEQYSSMVGLLESPALFFK
AGIPAASDVAHQRGYWPVLQRRCHCWTEKALADMPQTIFPKPTPAPASDL
VLKLEKLETLLGYKFRNKWLALQALTHPSHSQKSRRSERGNGEMVIISDY
QRLEFLGDALLDYMVMVQILFENPDFMPKPLHVEKRQTVSNEHLAKRALE
WLQLHRFYDSDSIELNRCVEMFASDSNALDGGREDEDEQSDGAARSASGP
KALADVLEALIASVYIDSEGDIQRLVEVFMPFIRHNAEAVEEVKESREAR
FDLATVTQCRLQSTSVLELSVKDERQLRGSLPTLVRTLRKELAMENDDEG
YDALMRQIERETSQATLAKAGAKESKEVSNEEDPMEVDQQVMEDDASEIE
GKLGGDAAEDCGKLMITDA*
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Synonyms
Publications