jgi.p|Nanoce1779_2|538692, gene_2486 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|538692
Unique Name	gene_2486
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_5:463188..467337 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	538778
ProteinId	538692
Product name	Vps54-like protein-domain containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:463188..467337 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042147	retrograde transport, endosome to Golgi

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL071	ncniL071	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01630	NO07G01630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538692	mRNA_2486-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538692	mRNA_2486	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|538692

>mRNA_2486-protein ID=mRNA_2486-protein|Name=jgi.p|Nanoce1779_2|538692|organism=Nannochloropsis oceanica|type=polypeptide|length=1076bp
MSSSSSSSNVHDGSGGSSNTGRQGSNSRGGSAGERSGAFLPSSSGTWGGS
STLSLSGTGQLGSSICAPSPLTYNSPTKRFGYTRWPPLLSPISQEAESGG
GGGGSGGGGGGISSSGNLHHHCSSSFDEDAYADVRREMAQSGHNLTSVMM
DPRATGGVSDQLMSALLDQGHGVTPGPGAPGGPVPASVLAPVETSDLLSF
ARTTGPAMERYRQNHHAGPGQVRLYRPELLSSSQKAVDGAADLAECFREV
PGIFFHRDFQLSEPALFERVVVKATLDTQERLSQYLDVVETCLLKQISSR
SQHFFEALTTLQDVRDRLAQACRQVLNLRAGLHDIDRKTVMGMIRIPRLA
QRKVNLAVLLEKLRLIQDVQRSKGLVQSLLRAGDYMGALDVLEDGRALIR
EGGLAAVHCMGKLDRQLGEYLELVSDLMGSSFINLAMQFKGTRERKRKTG
EGRKAWYRGRLKDTLKGVVKTVLLEYLDIADYQYEEGKGEGGKESGRAMA
DRPRVVSNNGNGGGRGAVGEDDVGLLSGKVKAMEPGIFLDCLKLCFEQIL
LPMERVGMVHAFMEEQISVELSRLLDRRSSCNNNNKKSSSSRSSSGAGAN
DGLGSGEGSRMQQKQAPFKDEDQIKVLELQACKRLNDEVLRTLCDLCQRH
IASLLNARKDAHVRMELGQMKVLWDSTAHFVSAMERISGTAGFGLKSTLL
TQAKLFVEHLHEDASAQLLVALDAERWVQADVGTERQAEIDRLIAGKAVL
ASYPSSPIVGISRKKEKATEAIVGEGHYKVVWSALLLVTLLSNYLNVAAN
FPTLAMDVMQRVVDLLRLFNARTAQLVLGAGAIQATARLRSITAKHLALA
AQCLGLVIVLIPHVRAALGAHLQAKQRAFLLELDRLRQEYAEHQGRILGK
FVGIIGELVAQSAANTGLRETDWDAMGSAACRFVEEVIKGVSTMHKVLVG
FLPAGHVQDVFGRVFDLLGLRLKDYLEEARPMTNAGRQRLVDEVSHLVTS
LSMLRGVNAEVLTQLEMTIKEKYSSTSSSYFPPSSNSSSTPSTKAFPSES
PTVVVSPSPVVLTTSPPSSPSTPPS*

Synonyms

Publications