jgi.p|Nanoce1779_2|550879, gene_242 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550879
Unique Namegene_242
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:604883..611865 +

Link to JBrowse

Properties
Property NameValue
TranscriptId550965
ProteinId550879
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:604883..611865 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0030130clathrin coat of trans-Golgi network vesicle
GO:0030132clathrin coat of coated pit
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02520NO01G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550879mRNA_242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550879mRNA_242Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|550879

>mRNA_242-protein ID=mRNA_242-protein|Name=jgi.p|Nanoce1779_2|550879|organism=Nannochloropsis oceanica|type=polypeptide|length=1741bp
MAQHPIVLLELLDLPALGINPEAVKFGSTTMESDKFIVTCETVGDQQNVV
MVDLQAGNAVTRRPISAEAAIMNPVSKVLALRAGTQLQIFNLELRAKMKS
YQTPDPIIFWRWVTPNTIALVTQNGVYHWSIEGDAPPVKLDKFDVFPEGT
QVISYKLSGDGKWALLVGISAGSNGVIDGRIHLYSIEKSRYQQLQGHAGC
FATIKVPGRTDPAQVLIFEEKKSEQPAKLFVMEVGRDKDAPGGVFRLQPQ
FIQFPAEAPNDFPVSMTSAPGQDIIFMITRMGYLFLFDIHTGKTIYRTPN
RIAKDTVFATATQDASNGVLGITARSGKVLQMNINEQTIVPYIVQVLRDN
QLAINISRRLNLPGARDLYVAEFNKLLAQGDTAGAAHLAAESPQGILRTQ
ETVDRFKQIPTIAGAPQPIFQYFSILLEVGPLNKSESLQLVELASGRTQL
IEKWLTGDKLEASEELGDLLYPIDANLALSVYIRANVPEKAINCFLQRGE
FDKIVAYAQKVGYRADYTHLLQNLVRAHPQGAVDFAKRLVANEQGPLIET
QAVVDIFMSLNRVQETTAFLLEALKANKREEGHLQTKLLEIILLSGNPQF
AEAILQNEMFSHYDRPVVAKLCEQAGLFQRALEHYTNLADIKRIMAKGGA
ALSPDFLLAFFGRLNKDTTLECLNDLLGANLRQNLQLVVQVATKYSDQLG
PEPLVKMFEKFKSFEGLYYYLSAIVNTSQEPLVHFKYIEAAAKLGQLKEV
ERVCRDSTVYNPQEVKAFLMEAKLPDPKPLIYVCDRHGFIEEMTGYLYTN
NLKKYIEVYVQKVSPAKTPQVVGKLLDLDCNEDFVRMLLQSIGIACPVEE
LVEQVERRNRLRIAQPWLESLVATGNTETATHNAIGKIYITLNRDPVNFL
KNNQFYDPLVLGKFCEKLDPSLAFLAYCRGGGSCDDDLIRVTNENGLFKD
QARYLIEKRDGELWAKVLAEENQHRRALIDQVVQTALPETETAEQVSETV
KAFMAANLSVELIELLERIVLHGSKFSNTRSLQNLLILTAIKSEKERVQD
YINRLDNFDGPEIAKIAASEQYELYEEAFAIYRSGGGLNRAACEVLVDNL
RALDRAKAFAERINEPEVWSKLAKAQLDDDNVHEAVNSYIKASDPAHYSD
VIVVAQRYGAFGDLVRYLKMVRKQVKEPQVDTEYIYSLAKTSKLSELEEF
IAAPNVANIQNIGERLFEEGNYEAAKLLFNNINNNSKLALCYINLNQYRE
AVDAAQKANSISTWKEVNVACVKVGEFRLAATCGLHIIVHPDHLEELIQH
YERTGHPAELMQLLEQGLGLEGAHSGVFTELGILYSKYLPEKLMEHLKIF
HNRMNVPKMLRACEKALLWDETVYLYKEDGQPDNAVKTMIEHPVAFHHEL
FLDCIQKARNQEVYYRAIAFYLEQQPMLLERLLSLLTPNLDHARVVHQLR
RAENLPLVLPYLKSVQKENISVVNEALNELYIDDEDYAALRDSIDSHDNF
DQIALAVKIENHELLEFRRLAAALYRKNKRWAQSVSLSKADKMYKDAIDT
AAQSGEADLVEDLLRFFVSVQDRECFAAVLFTCYELIRPDVALELAWRNN
YYDFFMPYIIQYLRHAHERIKALEARTASLDVAHKEAESSAAAAVGDAAV
SLGLYGNHLMLTDGGPALLANEAFNPTTSYEIGGGGGGGGGYGAGGAGGF
GMALPPQGYGQQQQQQQVPYPPQGGFQGGFGPQGGYGGSW*
back to top
Synonyms
Publications