jgi.p|Nanoce1779_2|668991, gene_2365 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668991
Unique Namegene_2365
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:162654..167554 -

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Properties
Property NameValue
TranscriptId669077
ProteinId668991
Product nameCPSF A subunit region-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:162654..167554 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00530NO07G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668991mRNA_2365-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668991mRNA_2365Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|668991

>mRNA_2365-protein ID=mRNA_2365-protein|Name=jgi.p|Nanoce1779_2|668991|organism=Nannochloropsis oceanica|type=polypeptide|length=1523bp
MNLAAYTLKHPTGVSRVVVGHFLEGEEGEAEEEELLAMVRGVGTLEVACV
LPGRDNAVEDEAEGKKDDGEGAAGKEEGDALQILCSQPSFSTIRSMTTIR
PVGGPKDLLVVGSDSGIIALIELVATSTSTTTSNTTTTTTTTTSSSSSSS
SSSSSSHYFLRRVASLSVGLSGCYRGVPGQYVAADPSGRAIFACSLDGHK
ACAVVLRDKGTGEIELRETKKGLVGKGGGGRKVSGKATVFDVIALDVGSG
PPAFAVLAGGDEEDGMYAQERLAAREADGLDLPEESLKHVTVFELDLKSN
SLTQEEKGWRMPVSSTGTGLLALPSSFPSSSSTTLLGAFLVLSENWVGLK
HRSAFKELRSCPSPGLASEGGGGGGEEGGWRGIVQGEWGDLYEVRVGFPS
DAPSSSSSSSSSSSSSSSSSSPAPSLSVHALRDWLSPCSALAVLRKRVGR
KGGKEAKLLWAAAETGDNVLYVLGEAGGEGGEEGREAGPCREAGVRDDSE
SAAQVAPMFTRCRRRAEGGEEEGREGGREEGRWLTEAYREANLAGGGAAG
VHVLERGLPVVEELRAPLGFTPTGVWTLARQPREGGEEGGSGVCKTFLLL
SLVTRTLVLEVGEVLVEVKGEGLSGLFTDSRTLDAGVLTDGSMVQVVPHM
LRRVLPPSSPTSKAPPQLLEWRPPGRREIDKACIGERHVVVAVGGVEVMV
FEGPPSSSSSKGLVLKGAKDVGADVSALCVHCPSSPSSAALASPLLLVGT
MDLIVRVLALGGGGGGQELMEKARLVVTHRPDSLCFLSSARVACGFSSGD
LQWLELEGGGEGRREGGREGGLGAGATTMTLKTGKRRNIGTQSVRLLPFP
LGGKGGGREGGRKQREGLLAYSPGCVSWLCFEDEEEDGGGREEGVAIMRV
YEHPLAYDPLDALAVIHLRNIGQALVGIHSSSSSSSTSTSSSLRLLWLEQ
VDRRGLTEDVYAEALLHTPRGVASLPKSHVVVVVEGDGGGGGGGGQGVPW
PMTTTEGREEGDEGGEDAMDVVHQHGTSTNTNGSSSSSGNSSSKIRRRRR
GLAGSVLRVLEPSTGKTRQLLELEPGLMAVAVEVLKFRCAPPNELFVVVA
VVPMHSPSTSYPSSSSAAGSKMKSKRQRRDEAPTPIPGGGAAADKGGTAT
ITSISGLSPPPVAGYLYTYRVLASGLVLAHKTEIAQDQDVGPPLSLCAFA
EEGKLLVGFGPSRPTSPSSLPSSPCVRLYDLGKRRLLKKADSGPLGVRGG
GGRREGGRVGGGVTRLLHEGPWVYAVDCVKGVQVLFYVPSENAFHLVADE
YSTPRLISEALLLDRTTVAGADRQGNVFVSRVPWEAVVGVEGVGFEGGTE
GGKEGPVSRNVFWEICGEEGEAPSKMETMVEFHVGEVVTSMTTANLGRRG
GGGRAALLYATISGALGVLSPLRSPREKELLLALETALVKGLGGGGGGKE
GGGLDPVLFPTGRDPLTFRSAIRPSKGVIDLDLIACAGPTRRRKAAREAK
LDVREVEEVVGEAFEAMNLSRG*
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Synonyms
Publications