jgi.p|Nanoce1779_2|299196, gene_2288 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|299196
Unique Namegene_2288
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:1284473..1292178 -

Link to JBrowse

Properties
Property NameValue
TranscriptId299282
ProteinId299196
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1284473..1292178 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00001753'-5'-exoribonuclease activity
GO:00045345'-3' exoribonuclease activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04960NO04G04960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|299196mRNA_2288-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|299196mRNA_2288Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|299196

>mRNA_2288-protein ID=mRNA_2288-protein|Name=jgi.p|Nanoce1779_2|299196|organism=Nannochloropsis oceanica|type=polypeptide|length=1011bp
MIRSKAFFKRTRRGKVMRILEEHYLRDDVGLGTLHGASSSPLTPSELQLL
LEERASGRGGQREGGKEGKRPVLGILDTNVALEQLDFLENAQASGAVLGM
VILLQTVMEEVRANSLAAYRRLKKLLLDDSRALVYLANEHHAETYRDRLP
EESPNDYNDRLIRAASSFYTQQLGEEGGRVVMVSYDKDNLRKAMTLAALV
CSTHPELSDLLAVPSAAADAYTGTKGGRGGGKEEILPAHLSPAELNKGIK
SGRLLQGTLRVERHCWHDAYVSVRGLGDGEGGGDGRVSVLVRGMQNVNRA
LDGDVVAVEILPKQHWLTGQEELTFQEEKEAAEAAQEGKVQGEGEGGEND
TPSNYESLIPSPVVQPPASSSSSSSTVKPTGRVVGVIKRNWRVYCGSLQA
SADKVGGGGGGSTVSALFVPVDRRLPKVRLQTRQREALQDKRILVAVDAW
PATSRFPIGHYVKTLGAVGDKEVETEVLLHEYDIPWEPFSEKVMACLPPS
DWKMTPENTQGRKDLRSVPVMSIDPPGCKDIDDALHCTRLPNGNFAVGVH
IADVSYFVAPGSALDEEAANRSTSTYLVQRRLDMLPKLLTETLCSLTSTS
DHFAFSVTWELTPQADIVAVDFCRSIIRSVAALSYQEAQNIHDDPRRKDA
VATGIRDLNSLAKQLRSKRMEAGALLLASTEVKFVLDAESADPLDVQMYQ
LKETHALVEEFMLLANITVGKKILRHYPTLSLLRRHPSPSRERFEPLIAA
AASRGFTLCVDDSRALQQSLDASTDKDDPYINRIVRILATRCMFPAQYFC
SGECPQGEWHHYGLAAPIYTHFTSPIRRYADIVVHRLLAAAIGVAPLPEA
LMDKGNLHDLSENMNRRHKAAQNAGRGSTAFHTVLFFKENPAEAEDAYIL
RILETRLIVLVPRFGIEGSIDLKPLADHGLLNRDADGHRITCPGNIKLRV
FDKVQVGIRVAEGQAAHRDAVLYTLKRPLIPGLEEAAVGGGGKKTGVGAA
LGKRKGGGSK*
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Synonyms
Publications