jgi.p|Nanoce1779_2|293321, gene_2083 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|293321
Unique Namegene_2083
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:754505..761686 -

Link to JBrowse

Properties
Property NameValue
TranscriptId293407
ProteinId293321
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:754505..761686 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0030130clathrin coat of trans-Golgi network vesicle
GO:0030132clathrin coat of coated pit
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03100NO04G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|293321mRNA_2083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|293321mRNA_2083Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|293321

>mRNA_2083-protein ID=mRNA_2083-protein|Name=jgi.p|Nanoce1779_2|293321|organism=Nannochloropsis oceanica|type=polypeptide|length=2204bp
MTTPKKKRGQPLIATSRPDRTTVFVVDKSVAPQVIREVACGGTCGGSSSC
SSWAGEVVCGGPVAQVAVSTTNAGHSLLGALLESGVLEIWDIAAPEGGLY
TLREVVHLPAAASGEVNSSGSSTSSSGEGDKNASNSNSDALSDCLFAGSR
GLPSGLFFFVTRGIGGKSGGSSELSRLHVVRIHPSTGPPTVGTQRLTAMD
ASRKKVAVVALTCHESQPLLCVGFQDGVLHLYDVGGVAAEKGRAGVEDNV
ISATARSYVPDGSSKQENRDFGDDNNDNDDGQEQASGIATTGKAAMSVLL
GRSVRNLLLPVAALKFGIHMQGALSCICMTSEFGIILAGSTRGEVAVWST
NTLLRETAQGENGSDDALNLSGAVLPLQSCEVMAMPSPIERIELLKCSKP
LILVSVRAANGDSDVTRVALLAFLPKSLVVVHMGPPVRTRHLAFQSRNSC
IILSGEGNKVNKLLVSKLADVLACPAFPLPSQLAAIGPPQLDCGAFLADS
WGCSQPSSSPSSPTHAPFIYSIQSRMLLSLHQDDTNSFSASRKSGLSSVC
GSLTLKALVVARPLHHLQNKRSSDRDKDIQAEAVLLLPTYGKDFSVLLDR
LSLSHSVPIFSGLNEDNDQILLLPHRLIVSPDGSLIVVLLRILRPKVAGS
DNVVDACAPLAYVVVRQSSTAQDGGSVETNNGNQVALVSLDFVHAGVTID
AAFLSPRILALLQSYTGKCGAVVKTTLLQANGDPSAATTAWVMSQTVEDG
DVQTEDGAQEYIPTRLFRAGGSGFPYEGEGSLRVLCVRQQRQAGGNGSTI
LTCSRIGGGFPPSFVGSAVLRAQEVIMEAINQTSNGQGIEAGSVIAVLTS
QRLLLFSPDLTLLAGVELTMAPCGLAWLGPTPLIVFADGRVLYLSLDSGA
TELRPVLSLDQEQAGADVILVAALPDRLVYAANNGASGSLRIFTRALLPL
EPLLVGFLAWPRLVKLPVISFAPSALYSPSPPPPSAVEAVTSSPFLTVAL
KTLLELYGPLAKQRGARYALGEGPSVDAGATAWACAALSRAGFGGWAAAL
AGVAGTVQLGKGRESKTALLAGQSEGPKAFQPRPWIPPEVKAGLAAQNSQ
WQDAMCEAMGDNIVKGQDVALHSDITLPPRFRHRSRVLALLGQRAWQAGQ
TEEAFRLFDLAGEDENAMNLLILHLLGGGPVSDGCAQLLRDLCKAEPHLL
ACLREGEAFMTKEVGPEKKRKAAVASLVCARLSLQTFPFDYQRRQYLLPR
LSGAILQLPQWPQAGLAPSTTAFVAFPATPSSSSSSVSRGGPPRAPLVQA
LLLDRVEEWLGRVAPEGLREEISRLDERERDATKREEEWVKGVGEGREED
NVVLYLRFNEPTFLADSSMAVEVPLRMAGDLSQYGHSLDLANGQSESLSF
VKSTCPIDQGDDVKVRMGMDAFWGTSNIPYGSLSSSLLPRGLRAVVARGS
ALDVGPYHGPQEQPGRCRLTVELWIQRSSSSSSYCSSQPEVLITRKTIDE
QSMYLWGLGISAEGALIFWTEGKQAPLSTVPGTVMEGIWTHVAFTLEMKS
SGGKQATVAFFVGGKKAISTQSLIKFPFLSESQLRRTVLEVGPNLRGHRM
TELRLWACARSADDLYDYRESYLQLAEKRKKLAFRIKSDGGRSIRNEGSD
IQEAAPTSPPPLPVKAARKRENFAPLPNMADGVMFPVRRRGAGREDTSSI
TLLDGLRGLSGEGACSLIASLPAPTANDTAVRRWQSRANSLARSADGLVI
QSSPPPTHPSVDIDTGWAGFKEDPVSRPTSFVVTTTAPLAAAEHAPPTLG
LQMVSTPPELKHLLLLLPSELDVNPANVLRDEIAGYFSQCGQYLCLREMT
RFTNLESGIPKVAIVVLAVTTSADQLARRDRYPFQAKSAILVGGLSSSSS
SSSLPFLLSSPVIACYTVAKTTTTTTGGRIKQPQAGVLQVYDLMQRRGVA
RQPVQTRVLFWRWISRGVIALVTPRAVFLWTVGVKSGPSGVPTKTFDRRD
LTLLGPNANVRDYHHAAGGEWGVLTTVDGDGARLAVQFHDIRSGKVIVES
GTELISANVGKCDGGVDQGNRRSQTYFVMLRRCPELTVDLCVEEGKGNEQ
GMCNPRLVRLARLPLPSAPASLSDSWRAWVLFPPGRTDIIVLLFSAGGLL
YTCCSATHRIEARGSVFPEEQAGAVLDVSWDVVSGDMLVLEAERLAVFRV
SNL*
back to top
Synonyms
Publications