jgi.p|Nanoce1779_2|628222, gene_2066 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628222
Unique Namegene_2066
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:691046..697227 -

Link to JBrowse

Properties
Property NameValue
TranscriptId628308
ProteinId628222
Product nameputative DNA-directed RNA polymerase I subunit RPA1
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:691046..697227 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00340625'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL058ncniL058Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02950NO04G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628222mRNA_2066-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628222mRNA_2066Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|628222

>mRNA_2066-protein ID=mRNA_2066-protein|Name=jgi.p|Nanoce1779_2|628222|organism=Nannochloropsis oceanica|type=polypeptide|length=1769bp
MTERCVIRHDVSEVQFGVYKEEDIMRLSVVRVSTAATYDRLGNPLQGGLY
DPAMGPVDARSVCVTCGLSMRDCPGHMGHIPLSLHVYNPLTFATVFQALR
VKCFGCHGFRLSAFPCHVFAAKLGLIDAGLSHEAEALDEALARADINGGT
VLRDVEARLKRYHQQQSSTSAKPWASGEVKSRRRGLVKEFLSDVLGCKTC
DRCNAPKATVRKDGYTKFFLKGRRVGASKGAAGRPPSALAKVRSVGGCEG
EMEADDSAAEDDYDSDDAEEDGSENEVPQRAAMPTCKSLKEKEGDKYMAP
VEVQMHMKLLWEAEPVLATLIWGKAAAEGFVFSDEGSLATGCVDGWKTFF
WRVLPITPSRFRPPSKNDDGSLAEHPQNHNIIKIMNLDDRIRTLLRGEGG
TEEGAAAGPETLSPEALSRVLSSWIDLQNAVNGYIDSSKDANARLGGANV
TPGIRQGLEKKEGLFRMHMMGKRVNFACRSVISPDPYIGTSEIGLPLRFA
KVLTYAQPVTQFNASQLRGLVECGPDGYPGANYVEDAKGRLVDLRRMDAQ
KRKAVAARLLTPPGQKVWRHLHDGDIVLMNRQPTLHKPGIMAHKARVLRS
PTQQTIRMHYANCNTYNADFDGDEMNCHFPQDELSRAEAETIACTDEQYL
APTNGKPLRGLIQDHVGSGVKLTGKDSFLTRADFQHVLFCTLSGLPGVEV
VQPQGKIYMPAPAIWKPHALWTGKQMISAVLRHLSAGLPPLNLDFKAKTP
AVAFGVDQEENEVVVRGGELMRGVLDKAAFGASEGGLVHGVYEFYGPRYA
GRLLTALGRLLSVYLQFAGHTCGVEDLVLTQAAEERRRALINRANRLGGL
AMDRYTTGETFAPPPLASTTEEEGVKEGEGGELDAVGLMRVKARTAELLE
EDMRTGTVGQAAGIDNFMRTVLSPVSSDIIRACLPDGLTKPFPHNAFSLM
VSTGAKGSTVNQSQISCGLGQQELEGRRVPLMPSGKSLPSFPPHDPSPRA
GGFIVDRFLTGVRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLVKGLE
EVRVHYDHTVRDADAGVVQFLYGEDGVDPLHSKYLDGQMPQMTALARNFA
ALLHQYRVDAGFLERTGMDLMTARGMHREIMAGRAQVKQQQEEKKKAQEE
STAVVPVSLAVGSMVLAKRLKRQRDEWITGAWNHGWEPAEVVKVHAAKTH
RPATYDLKYGSDGTQLGLHLGAVSERFQDAIQEYLAKDPENLFGESPGAG
DSKSKASLELLLWLKYMRSLTPPGEAVGSIAGQSIGEPSTQMTLNTFHLA
GHGGANVTLGIPRLREIIMTASRNLKTPSMTVRLQPSVTKIEAQRLSARL
RRLQLLELLHHTQGGVTVTERLGKPAGGKDAWHRYYTIQLKLHDEKILEK
AFGLNYEGIIEVIGVKFVKQLLALVTQELRKVASREEMVRALKQQREAGY
GSEAVPLIQRRRIGEGGDEGDEADWKDVSAAGGKRRSSGNGRKGGGNAGG
NTGGNTGGTQREVDVENDGEEDEDDEEDDEDRDDAQGTLTFGRKEEQGEY
GADEEEDEDAEEMQGNVSEIEAAADRCMVYTSKGITQAFVVEGKDSRRSI
QTEGCNLPELWEMGEEVLELGSITSNDIWAIHQTYGVEAARATIVNEIKG
VFGAYGIAVDPRHLGLVADFMTYQGGFRALNRMGMSQVSSPFLQMSFETT
ATFLTEAALAAEYDNLETPSAKLVMGQPTGNGTGSFDLMVPMQLGGGVRR
SKGKGMPMVGKEDRMEEA*
back to top
Synonyms
Publications