jgi.p|Nanoce1779_2|628218, gene_2062 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628218
Unique Name	gene_2062
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_4:673674..684518 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628304
ProteinId	628218
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:673674..684518 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004386	helicase activity
GO:0005524	ATP binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL058	ncniL058	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G02910	NO04G02910	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628218	mRNA_2062-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628218	mRNA_2062	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|628218

>mRNA_2062-protein ID=mRNA_2062-protein|Name=jgi.p|Nanoce1779_2|628218|organism=Nannochloropsis oceanica|type=polypeptide|length=1479bp
MSAFLEDDAVAYGKRALSDTGSEETLERTYDLLWHDLIQHRSGKGGEADK
TIMPKIMRELAPGGTFFDPRVVWEAEKDRLIAATEEAKRKEEEAEKQRLE
EEKKQERLQNRMKKMAITTTRDEGGKEGGEESAATTSSSRAPSPVSAPED
LKWRQELATKIKLARQTVKGEYGEGEVGGQKAEGAFNDFVGKLEKLWGDS
IKASSKSQKTEIEKKLEKMAKTAVKQLKEAKEEEVKAGGGGPAGGQKKKS
AVIREKLEAKKQVDDVENDAQLLSNTLSKFKRTLVPSLLGLKENLKSPHG
RLQWMLEVIKASLGQRPRDDVLILDCLFALIELPMFVSARKEVKAREKER
KKAKESMKGKKEKEGKDGKKSKKDKDKREDEEELRFAPLSREGELVARFS
DTIDEVMGLLGDIDDVIEFQLVKMANCLPPLSRFSFGRSLDGWQKKVLGL
IDQKRSVIVCAPTSSGKTVLSSYVTMRAEKILFVVPTEPLVWQVAAMFYK
VLGGEVAVVTNQIVYNPKREDPKDWRCIVGTPLALESALSKPRGREGAEM
LGQQDFSIFRGGFHEFEYVIYDEVHTLDGDEGAALQRIIKGVRCNFLALS
ATIGNGIALREWWQGVHDAHVADEVAEVEAMLEGRDDATREEGEDYDMLA
RLLRMKYAEIAPAQGTSDVKALKGRWSSLRAKCREAANASSKVPQDVLVR
VPPKQTTVELVDHKARFINLQRWVWVENKLKTLHPLAAMSIDFLTQSKGG
EGGGVGGVGGLAGFQEVALPFTPYDSFKLWEALRAEFEEEVIEDVDPEEI
LGGKRITLERSKDYEDILKVKLTTLARQGGKAEAKVKKVLETFAPPPDAT
ASESYRLLDVVQHMKDSGFFPAIFFRLDTYSCVELLNELLKQVEAAEKIK
YPTYYADLTKKKEAREELARKARDAAEKRKDKKVKKRVEVDESGNRVEAE
KDEENPADAIVNVPPPVDDTAPHPDFVLSSPVNRITDQELSDMLDKLAKD
HMDAEHPYIKGLRRGIGLYVDDSHTQEYRRIVQSLAQQGKLAVVFSDHSL
AYGVNMPFRTSTFVGDDPELLTPLMAAQMSGRAGRRGLDEQGNLVYLGMP
WERMKVLMLGCIPAIRGREPRYPTMALQHVLSQHYNRHSVAKTDRVRFFP
EYINEVRMKAIAGPALEDFLQAREAGAELKATPHPCDDVYYKRSLRALEA
LRFIKVEKAEAAEVAEDEEDLKEVVKAPGVLALLWELREYPAEGVAVVHA
LPWMMKKVRPTLEKKTAGLVFKQWSRRVKIDDVERIFLTMLLPLIDREAP
KPGVTPLHQETFVTGNPARADICSDVEELLRRSQARVQEVDEADRVSLLL
ERQPAASAGDPPTPLDSTLFKLLVMRRTPGSDPTLSALTSVDWFRLKQRL
WKVGSVVRLMHNCLGKAGDGSERYAVFLLWKTFRRIWHIMRDLMVYGTKW
VGGEEGLGAGAGEDGGSDGEEVEEGGSV*

Synonyms

Publications