jgi.p|Nanoce1779_2|628104, gene_1923 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628104
Unique Namegene_1923
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:357833..362029 -

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Properties
Property NameValue
TranscriptId628190
ProteinId628104
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:357833..362029 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01380NO04G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628104mRNA_1923-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628104mRNA_1923Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|628104

>mRNA_1923-protein ID=mRNA_1923-protein|Name=jgi.p|Nanoce1779_2|628104|organism=Nannochloropsis oceanica|type=polypeptide|length=1155bp
MGIAGPPVAAAPAVIVSSSSLSSSSSCVSVPRGTPLPLPPTMSSLSPPVL
DPALKQRERWLKVALKKVHATSLGDAQRAYEFLLDDGKTQPDALLAPVKA
ALEQARNMEQELRELLEAQVAKEMAEMEAKEAEKGAVKMLKEEDPATTAA
TATAAAAKKEVETDMEAEHGDKGKSEGVASITYLENKEDGNGCGNGGKEG
KEAGVEVKGKIEEGATVEAKSDGTTFGLSSSPSNEDAALALAVPSISPPL
VVLKPIDPMEGVPLVEASRTIQAKLHEHQVEGLSWLVHQYRNAVPAILGD
QMGLGKTLQSIAFLAYLKDNMHVSGPHLVVVPLSVMSNWMAEIERFCPSM
RCIRFHGPKQERARIKQEELTDVREFDVVVTTYEMLTSEISYFRRKFFWR
VLIVDEGHRLKNEKSQLSENLRKLPAFYRLILTGTPCQNNLRELWALFHY
LLPDVFTSSSAEKFEEGFDAQRGVMDVVRMKEARSLLALLMLRRRKDQIS
MTLPSKTEVAVVCGLSEYQRTWYKRVLTGVRGELLTTGAGAALEMADGEW
KKLLNILLQLRKVCNHPYLMSDSVYTLGEDLVEASGKLKVLDRMLPKMKA
DGHRVLLFSQFTSMLDILEDYCQLRGYDYVRLDGNTNRVQRRLDMRRFNA
SGSNLFIFLISTRAGGVGINLASADTVVLYDSDWNPQVDLQAMERAHRIG
QTKPVRVYRLVVRASVEERMVSRAHKKLFLNEMVAEREEEAEQGGKENSN
GGLGDLGDDGAEGEGEEACQVEVSGEAGDDPVEEMEKVGSSTALAKDEVA
RMIRTGVTALFDTNKGDMTDEELDVLLGLREGVVGGGGKGEGGGEGGDEE
QERAVAGFWQEAAGQGGLEEVDVRHLEGVNYEKAKHDFDRGVNGRGGEGV
EDSEMVELGVRKRKQRLVMVDGRGSGYGRSVPVLADEYARSQKEEAEAEK
AAEKANLRATGGGEGGGEGGPTGEKEDGTSAGPKRLRREWEHESECFLCH
EALLLAGEKTVKKKEIFKCGYCPKVYHTPCLSGFTEEDVEGSGPANIMVC
PHHKCCGCRRTTAAAGGLLFRCVECPRSFCEDCLEDEQIESLGRWKPLEA
LGYYTKQAYFIRCPTCLNTEDEEGDEVGEEGEEDQGDGQEGDGQREEEEE
KEEE*
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Synonyms
Publications