jgi.p|Nanoce1779_2|537942, gene_1917 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|537942
Unique Name	gene_1917
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_4:343161..348685 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	538028
ProteinId	537942
Product name	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:343161..348685 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL059	ncniL059	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G01330	NO04G01330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537942	mRNA_1917-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537942	mRNA_1917	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|537942

>mRNA_1917-protein ID=mRNA_1917-protein|Name=jgi.p|Nanoce1779_2|537942|organism=Nannochloropsis oceanica|type=polypeptide|length=1442bp
MPAAVHAPKDLWGAAAADDVDALRCLLGQGEELENDTFKLYVDERDDHGR
TALHAAASIGAETAVRFLLACGANPNKADWESHWTALHRALYHGHLRTAL
LLLRAGAVLGDELTPWHSKEHARSSSSDRKGGSGRSKEGLDKDGFTPLSL
LSWRLRAHLQQAVREGRGGDVVTFGKSDFPLGYALPNTRDVQKPRRVDAL
ADIEVVTVAAAKHHSVVLDVQGRVFTWGHGRGGRLGHGDEHPQMFPKLVS
ALVGLRVVKVAAAENHTVCVTDQGLVFSWGSDRFGQLGLGGGGSVMAAAA
AGAQGQGQGSTRLVPRRIEALRRCVVADVSAGATHTVAVTREGEVYTWGG
NKSGQLGYEGVGAAGDGMPRMVSLLYHRTNGKDPRRAIQVSAGCRCTLVV
VEGGAGPHVPNKVYQFGYGSHVPLRVDFRPAEKAQRESSNWAAQDGSRGG
ARINIVQVSAGRHHNVALASSGLVYTWGLGADQLGLGTGGGGEEGGGGGV
THTTCPRVVHGMGQDRGVFVSASAGHTCVVSETGDLYSWGSTDGQQGILG
HGHGSWQPVPRRVVGLKRGIKVAAGPEHTMVLLSASSPALPHPHADLKTV
QTQLGAAGCGRTSDEDEDEDEDEDEDEDESRSPSPFSVGIASASLPALII
LPTLKELCERAIAAQVDMRNAISVLAHSEALNSQELASYCVEFVQRNLDG
ILVGGRPADLDFLLEDAADEINALFEEASSSSSTTAAAAAAAEEEGASAA
AAAAAAAAAARPSPVTTMLVRVQRGQDPTLDEALRLERGLKKRLTQVEEL
ARLEASGMELSVDQVRKLSRRSILESEAESLVPLLARLRVKHNARKVCDK
EKVMTTALAAGLGEDCEKDGDQKHDQPKVTEDKAFYLSSTICSSPSLLPT
TYICDACNVTCTNEGIWQDHLKGKRHSKRLSKVQAEAAIIQAAAEQASKE
ILEKEMWQRGLPLPPAPTTPSSPWSTGITAPSTPISSVGPSSVSEHHRPL
PSVPSSSSSSPPNSNKKSFREILDEEERTAAAAAAVAAAAATAAKGGRSR
GMSMSTFGSSSTSSPYGKSQGVAVGSPHGQARRRNSTSSSSSSSSASSGT
PLHSLSSSINAVSGVGGEGKECTVLLSDFMKTTTTTPRPVVPALSSSSSW
AATGSSNAGGGNSTKSDVSSSRACGKQAGLSRAVVSTNAVANVLLHSSPP
AAAARGTTPSFELIMAEEERKAALVRFDGNNCPWLSGRRERSDSFEVIQK
QQRELETLREEEESRAMAEALAVAATEEKKERQEEEDRWFRKQIEQQQQQ
QRRCPASMTPPSSSSKSSTSLSSISKRKKKSQQGRPTTTQAATGTMSVVD
GEGLQMPKKNSCKGVGGGSGSRGGKSRQPVLSPASSSRRALGGEGNSRRR
SSNASGEKERQGVAFKPTTANPAAATTVPTSPPLSVSLIPC*

Synonyms

Publications