jgi.p|Nanoce1779_2|636919, gene_1817 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636919
Unique Namegene_1817
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:84569..89747 +

Link to JBrowse

Properties
Property NameValue
TranscriptId637005
ProteinId636919
Product nameputative AMP-binding enzyme
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:84569..89747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003996acyl-CoA ligase activity
GO:0004774succinate-CoA ligase activity
GO:0015645fatty acid ligase activity
GO:00188543-isopropenyl-6-oxoheptanoyl-CoA synthetase activity
GO:00188552-oxo-delta3-4,5,5-trimethylcyclopentenylacetyl-CoA synthetase activity
GO:0018856benzoyl acetate-CoA ligase activity
GO:00188572,4-dichlorobenzoate-CoA ligase activity
GO:0043759branched-chain acyl-CoA synthetase (ADP-forming) activity
GO:0043762aryl-CoA synthetase (ADP-forming) activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00380NO04G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636919mRNA_1817-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636919mRNA_1817Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|636919

>mRNA_1817-protein ID=mRNA_1817-protein|Name=jgi.p|Nanoce1779_2|636919|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MLHACRAQASMLLLPARRGAASSASSFLHLGSSGSSSSSSSSSSHPTLQQ
VRHNHRAYDSSFLQARRANYQPLSPLSFLERTAKLYPRRAAVAYRDETRT
WAEENLRIKKLGSSLYKAGVRPGDTVSVMCLNTPPIFEAHFAVPGVRAVL
NTLNTRLDAPIIAFQLRHGESKVLITDTEHSAIVEAALQILDKEGVSRPL
VVDIVDRHYLGEGKRLGKWEFEEFLAQGDDGFELQGPEDEGDAIALSYTS
GTTGDPKGVVTHHRGAYLNSLANIISWRAGMPQHAVFLHIVPMFHCNGWC
FPWAITALAGTHVCTRWIRSDLLYEAMDIHRVTHFCGAPILMTLLLNASH
EHKRDLHGRNIQFMTAGAPPPPSLLRALKKDVGIDASTAYGLTETYGPIT
VHVEEHADEYPDLEGHALDCQLQWQAPNVGVEEVIVADPETLLPVPADGE
TQGEVLVRGNTVMSGYLKNESATEATFAGGWLHTGDIAVAHKNGRIQIKD
RLKDIIISGGENISSIEVENALHLHPSIAEVAVVAKPCDKWGEVPCAFIS
LKDGHVLSEQEAIAFSRQNLAHYKAPKRVIFGPLPKTSTGKVQKYQLRNL
AKESGPH*
back to top
Synonyms
Publications