jgi.p|Nanoce1779_2|573048, gene_1670 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573048
Unique Namegene_1670
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:1199023..1203828 -

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Properties
Property NameValue
TranscriptId573134
ProteinId573048
Product nametyrosine--tRNA ligase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1199023..1203828 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004831tyrosine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006418tRNA aminoacylation for protein translation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04650NO03G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573048mRNA_1670-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573048mRNA_1670Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|573048

>mRNA_1670-protein ID=mRNA_1670-protein|Name=jgi.p|Nanoce1779_2|573048|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MSVDQRFSVQATACFTVLEAPGVTQKTSSSSSSSSSSSSKPTNGSKISSS
IAIGSLVNISGSGKRGPSGLIEGKEYYVSTLPLDEKFTLARSVGEECIQE
EELRSLLEKKPHPVVYDGFEPSGRMHIAQGVMRAINVNKLTQCGCVFKFW
VADWFALLNNKMGGDLKKIQTVGKYMIEIWRAVGMDMRNVEFLWASEEIN
AHSNEYWSRVMDIARLNNLARIQRCCTIMGRKDTEEMSAAQVMYPCMQCA
DVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFKPVILSHHMLMGLKEG
QEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEVVDGNPIVDYVKHIVF
GYYGKIVIAFHGGESEEYTEYEKFEADYLSGKIHPGDLKPAVTVAINSIL
EPVRKHFETDAEAKKLLEQVKKFKTTR*
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Synonyms
Publications