jgi.p|Nanoce1779_2|571679, gene_1306 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571679
Unique Namegene_1306
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:232116..239436 -

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Properties
Property NameValue
TranscriptId571765
ProteinId571679
Product nameDNA-directed RNA polymerase II largest subunit
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:232116..239436 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00340625'-3' RNA polymerase activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005665RNA polymerase II, core complex
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01290NO03G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571679mRNA_1306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571679mRNA_1306Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|571679

>mRNA_1306-protein ID=mRNA_1306-protein|Name=jgi.p|Nanoce1779_2|571679|organism=Nannochloropsis oceanica|type=polypeptide|length=1800bp
MDSYFEHSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPIPAGITK
PENYFNGKPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGH
FGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMVDPKDEMVKRIVATRR
RAARLKALHEICVKGTKRVCVGSPVPEGIALADPFAAAAAAEDQGCGAMQ
PVYRREGLRVTVIFPDVVEGGAPNPDRKQYLPAEEVYRIFKNMSDEAVEM
LGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVK
ANMKLLDAKKKGEPRDIQEKLELHLQEKVANFFDNERNNAEQEKHKSGKV
LKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIA
LNLTVPETVTRLNIQELQQLVENGPDVHPGAKYIVRDDGTRQDLRYAPST
SGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLN
LSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVM
GIVQDALLGCSRLTRRDTFVERDVMMNIMMWVGSLGIEHQVPVPMPAVLK
PRPLWTGKQVFSLVLPKGCNHRGNSNMKAPPKDELNSNDSQVLIQDGQVV
TGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWMLQNSFT
IGVADTVADTDTLTNIAKEIEVAKGKVRRIVEDAQQGRLEPQPGQTVFSA
FEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMC
CLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEF
FFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVKGSV
IQFLYGEDGMDAVFIEKQGLRHLELNRRTFEARYVLDVLDDAFGQIPGKP
GEYYLSESVRTACRRDTATATLLQEELSQLLEDRAHLARVLTARPRGKET
DTYLPVNLDRLITTARRNERITDRTQSDLDPKDVIQAIKDLCVKTVVVPG
EDVFAKQANSNATIMFHIFLRSTFASKRVLYEFRLTSVAFKYILGQVEDH
FIQAQVAPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLN
ELLNVAKTCKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEI
VYDPDPKTTVVEEDEALLEYWYGVDVDGDADGEGAASPWVIRIELDKDKV
AAKRVQLEDLQALIMDVFGPETFQIIVSDQNMPRQVLRLRFVPDDDEDVD
IEFLKSVEEQIRSKLKVSGYDKILKVYGLTDDIKTWHPDSGFSDRKEPYF
VTHGVNMMEVMACADVDFTRTTCNDLIEIFESLGIEAARSGMLNEIRSVL
FFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETV
EVLNQASLFGEYDDIQGVTENILLGQIARVGTGVVELLLDEEKLKNAQEM
PEYGGGMIGGDDDGMGGGGGGFGAGTPGALTPGIATPYGAFGHGAYGAGG
ASPGAMLTPGVHLGGGGDMTASPLGTSPFVSPMVVSPGRATPGYDAMASP
YVGGGGGTSPYTSASPAYSGGYRSVSSPGIGLGTAASPAGGGYSPSSPAY
SPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYS
PSSPAYSPSSPAYSPSSPAYSPSSPAFSPSSPAYSPTSPAFSPSSPAYTP
TSPQYSPTSPAYTPSDMGSPAQDAAYSPSSPVYSPTAAVDDGEGDVKKE*
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Synonyms
Publications