jgi.p|Nanoce1779_2|571621, gene_1290 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571621
Unique Namegene_1290
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:190577..195253 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571707
ProteinId571621
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:190577..195253 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01160NO03G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571621mRNA_1290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571621mRNA_1290Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|571621

>mRNA_1290-protein ID=mRNA_1290-protein|Name=jgi.p|Nanoce1779_2|571621|organism=Nannochloropsis oceanica|type=polypeptide|length=1360bp
MDSFQVLNRDCVANAYAYVIKRAYLGISALSIFCVLIVLGRMWWRAHRKK
NTTAIGRLIEHLVIVGACLDICFHLVDVLFALNCNAPPLLFLLGVLKADI
YSKATIPFNIIKEGFGLLSLSWHAHLAYCIYSWIVLKRSTGRLQRKQLPS
LVFTMAAITGVRLALFYQLREGMLGLFLSSVLYDVVLLPSIIAVMLRWYF
LTISVLRAGHRPRQHYQHQQDTDTGRESMQVKVDLSRAQTSGIARDGLVK
SLAASSMEVSTGEALPIHRSMQALPPSPPPLRQLRSVFKFPSLWSSLVRV
QSEESRRRESSSIQSASSDGSGGSFPQQSLNDGGEKRALHPQDRSVPLNP
PPLSVTSTAPAVRTGTMIGSRPPPPPSLYFQDVGSSRQERKRNSSIIRRL
LRISLSVALVWTLIAVSEITIWAQFYIYGDTTPIANIFLVRMVLMRMIGT
VDAIMLGDLIILCLPCANVFARMIERLRCASASPHGAVSAEPSSDISISK
GGSSVEREVTKKPESLASVNHKEDDMSRITQALDRIHRARAPTRCIKTLD
IFVSTWNMGGVDHQALETSGFVTSLLPQWLPPGYSLYVLGVQECQCLREF
REGVQNYLGGGQNFVMFGDELGDDQFLHGFIAITLFVQASDVASGAFRVH
RGAVNKVAAGVSLGALGHAPNKGMVGLSCRYFDVSLAFVTAHFASDSKGR
NRMGKRNKHACTTLRSLSLHDYSDDFEVHHQHHHQICLGDFNYRLSPASP
PEILGMVARSAQQMQMAMLGNASQVTSNPPVSSWRKARFQEFFRRPPSFF
YRLGDMPDLPPCLGMRHTSMASTISSGSWYNGAGHDLSAPGRAGGSYLNG
VLPNLFAAKSFSSLTQGKAKESRGPSVAFSGVPTSAAVAMLPSYSPHVGT
EGPITCSEMLGHRGIVIEGEVEQIENSGINPDPGPSSEAPITTYSVRPSI
ESTVTQGSEVGEAWEWVRRLDELSRSMRECAVFYDFVEAPITFPPSYRWN
RSKSGIELAGDYTDLEKLWVAYSTVVVDRPKLLSIPRLPSFIHQSSVASS
STVNSPRNDTSFASPSPPLRSTTSSRTPSYTDRILTHSLPGKGANLRWRH
YDMMDGVGLSDHRPVCAHLTLLADADCRGFRHMPPAPSRHVSSPQPEESI
RFLGSGSLAMETAVDRDDLALFTISLSHPHVTLKVGSKLSKSFSSVAHEI
TVLFPLVSEDPLASERKASSLEEVMPGAGGARPAAGLLRGQSSVSSLSFH
RWSSFPVKLKTVASMRFSEHLLFKLSDRRGNELGQTVIPVALGLHSKEHP
VPPFTSYPSNGSLPIDEIGEGSRVGQRDSRRFRFPLTKGGALKGWITLTI
KTRLGLVHP*
back to top
Synonyms
Publications