jgi.p|Nanoce1779_2|536793, gene_1031 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|536793
Unique Namegene_1031
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1052963..1057290 +

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Properties
Property NameValue
TranscriptId536879
ProteinId536793
Product namepoly(A) RNA transport protein Ptr3p
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1052963..1057290 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0003824catalytic activity
GO:0008641ubiquitin-like modifier activating enzyme activity
Vocabulary: Biological Process
TermDefinition
GO:0051438regulation of ubiquitin-protein transferase activity
GO:0051443positive regulation of ubiquitin-protein transferase activity
GO:0051444negative regulation of ubiquitin-protein transferase activity
GO:0006464cellular protein modification process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04400NO02G04400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536793mRNA_1031-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536793mRNA_1031Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|536793

>mRNA_1031-protein ID=mRNA_1031-protein|Name=jgi.p|Nanoce1779_2|536793|organism=Nannochloropsis oceanica|type=polypeptide|length=1137bp
MPRTRTRERDKMKPLSQWPRLAFLLASLLLQLPPSTHASSLASPPVDEAL
YSRQLYVMGLPAQQRLAASNILVVGVGGVGVELAKNILLAGPRSVTLVDL
TPARMTDLATQYYLDEQSLGQPRATASYTKLKELNPLVHLHLLEPSSMDV
DAVVDAVEARGQKFDVVVAADQDKTSEEALNRLARRLNAKFVAAQARGLF
GSIFCDFGDEFIVNDTDGREAKTGLLKGFEALPVTEETLVMLVDGERHDL
SKGDAVIFTPPAPGGDEESEGVAKRTFPDMSGKSYPVKRIVNPSSFTIPA
SPLLLSHAREYTGGRFRQLKQPLHLAFQPMGQARREMKSLPTDFGKASLG
RQLTLHACFESLGRFKAKRKGNLPIPGSAADAAAFKKLAAAWKPSSSTAK
KHFLPKTPVLDEKVVEIFARTCQGSLAPICSFVGGTAAQEVLKACTGTFV
PLQQYLFFDAVEEGGRTRVLAGLPSEEECTARGDRYDGMRAVLGSRLQRL
VQDQVVFVVGAGAIGCELLKNLALMGVVSLTVTDNDTIEKSNLNRQFLFR
EKDLGGPKSEAAANAVRRLNDQVEVTALVKKVGKETEGYFDDEFWFGHDV
VMNALDNVDARMYVDGKCVYYRRPLLESGTEGTSGNVQVIVPFVTESYGS
SVDPPEASIPVCTLKSFPYLIEHCIQWARDFFDGAFRIQPERLNDLIVAS
AVLAGLRAQTSDETLLRELEGYLVDLEIWDPMPSARRCVKWALDRFHELY
CSNIEGLLKEHPRESVTEDGEPFWSGDRRIPTPLKFDRCNPLHMEFMVSA
TLLKARAFNIVEPSTTIEGMYETVQAMLDEVLAGGYQPSTPVVRPEEEDE
VDLAEKVEREFHEVRQAIQRIANRGGGREAGTAARTRPEVFEKDQDWNGH
IALVTSASNLRAVNYGLAPADRLQTKKIAGKIIPAIATTTAVVAGLASLE
LCKLAQRSLHRRHRPPLEAYRNAFINLAGPFFALTQPMEASPIALGEQGE
VYNMWDRLELVPKKELTLRELLRHALEHFGVQVTSVTLHGSQILYADFVH
PGEDNPVMDKTVVELVEAAEGRKSEMPSPLSHQRQFVDLEIECVDDEGEE
VESPPIRYFFPKPTEGGGGAAVAKRWWGAVLKAVAK*
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Synonyms
Publications