jgi.p|Nanoce1779_2|626424, gene_10305 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626424
Unique Namegene_10305
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_60:29579..34956 -

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Properties
Property NameValue
TranscriptId626510
ProteinId626424
Product nameHelicase C-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:29579..34956 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL084ncniL084Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00200NO03G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626424mRNA_10305-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626424mRNA_10305Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|626424

>mRNA_10305-protein ID=mRNA_10305-protein|Name=jgi.p|Nanoce1779_2|626424|organism=Nannochloropsis oceanica|type=polypeptide|length=817bp
MPAVEIESVSVEFPFQPYPAQVTYMEKVVEALNKRTNALLESPTGTGKTL
SLLCSTLAWQQSYSLDKDNAVFAAAGPQGKPVIVYASRTHSQLTQVVREL
KATTYRPRTVILGSREQLCVHPEVSKLKGGLQNRRCGVLVGNRSCRYKNN
LDSFQVEQAGGLGGPGVMDIEELSELGRSKLICPYYLMRQNTLQADLVLM
PYNYLLDAGSRQPYQVRWPNSIVIFDEAHNLESVASEAWSLELTTTMTAR
ISDELEKAWELLKAEGEQEGGKEGGGGGGGVYATPPPSMEDLIWLKTAFT
ALEEGLDAVQLTAVGGGGGGGGGGRGGASSHPPLKSATLGPQKLQELLRE
AGLSGLLSQDYAAVVSRLERTINFLMDAAMNGGGRGGAGGREGGMGGMVT
LLSGGALDAFLKAFKMIYFWGNTTAMRKNMQAYRRGGGRRGSGEGRVSFP
QPTDEPPRRVLHYWCFCPGIALEQLLELSVRSVLLTSGTLSPLDSYAGEL
RIPFPVRLENGHVITAREQAFIATLGVGPRGEVLSSSFQRRGEEGYVSDL
GESLIRIARVVPGGMLVFFPSYGVMDQCVRKWKGREGGGGVLQRLGQVKV
VVEEPRKAGELQACMLAYDSAIKEQGGAVLLAVCRGKVSEGMDFADNRAR
AVIITGIPFPPARDPRVELKKKYLDTVAASSLSPSSLPSSSSSSSSSSSS
SSSTHLKGMEWYMQQAARAVNQAVGRVIRHRNDYGIVLLLDERFASSSQL
SSLSKWARPHVQGCSSFEGAIEGVSNFFARSGRPFFLVRTGEESAAAAAA
AAAAAATTAQAQASYD*
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Synonyms
Publications