jgi.p|Nanoce1779_2|674567, gene_10259 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674567
Unique Name	gene_10259
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_47:45364..54627 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674653
ProteinId	674567
Product name	GcpE protein-domain containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:45364..54627 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016114	terpenoid biosynthetic process

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL067	ncniL067	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00320	NO11G00320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674567	mRNA_10259-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674567	mRNA_10259	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|674567

>mRNA_10259-protein ID=mRNA_10259-protein|Name=jgi.p|Nanoce1779_2|674567|organism=Nannochloropsis oceanica|type=polypeptide|length=1253bp
MGKTSKPRRRKTELIRIAIASAAITCVGITLWYNKRTPSSFKQWGLYIPG
TVVVTPVHEAPPNSSFQPSEADLPSGSFPSSDSSVSQEEKASHLSVREGL
DAVKTMPSDPFINERREEEEVFMDKMAVKGTDKADFGKDRNQEASGDGQP
QNRDKESERAIIGELEKSNEHDDDDFLFKETEEDEEEMEQGDEEYNTIEE
FEGDDDHDDDDDFLFGESKENEEYKITGKLGEGDDNHDDDDVLFEETEEN
EVEMEEVDEEYNAIEDLEGDDDLDYSEEDDFLFEEAEENEVEMEEMHKEK
QGKKKKGHDAMEEELEEADDDSDDDDFFGAMETEEEEEERLSKMEVSQVS
VIKAHPNHFTPDQLFYISPDSERTGHCNRNGQINGFKRFILLTRNPFDAI
WSEYRRTVTTHIITRDAFDFAAFADVAVSKLSRQYKEMVMYFREVRRALP
KEDIFSIEYENMLDEDLRLSILSRMIHFIGLNEKERPKDLRRRLQCSFVL
AENEGGGRQQTTQDGMVRGSSILAGACLSTLLLASTATAAFIPHADLSAS
SRRLSTRRAVRMNNKDISHLKKYCETVYQTKRRPTRTVWAGKVPIGSEHP
IACQTMGTTDTRDVMATVEQAMRVADVGGDLFRITVQGKKEAEACHSIRE
ELFKRGYDIPLVADIHFQPKVALLTAEAVEKIRINPGNFADGAKKFTEIN
YENEEDFRREVEYIEEVFTPLVEKCKSLGRAMRIGTNHGSLSARILSFYG
DTPKGMVESAFEFAHICRKNDYHNFLFSMKASNPLVMVQAYRLLAAEQYA
KDWDYPLHLGVTEAGEGEDGRMKSAIGIGSLLMDGLGDTIRVSLTEDPEY
ELAPCRYLAEEIGKKATLATASAMAVPAWEETQRNFTNYGKRKGALPLQV
EGETIDFRSVLHRDGSVISAVTLEDLAKPDTLYYNLGCKTAVGMPFKDIA
TSDSLFLRHAPPLDDTVGRTALRRLQESGLGVIIPASSLASSPVPNAIAV
YDLPSLPPSGPPSLPAEAARYAITLTGKESEEELQKLKQLDPILLLVNID
PALSRVHASRRLMEFIQREGLTFSVIHHYVAQPGETKDHLILRCGSEVGC
MLVDGLGDGIMLEAVDHDLGFLRTTAFATLQGSRMRNTKTEFVSCPSCGR
TLFDLQETTAEIQKKTGHLPGVAIAVMGCIVNGPGEMADADFGYVGGAPG
KVDLYVGKEMVRKGIPNEEACDALVELIKEHDRWVEKSVDEEKPAEKEVV
KA*

Synonyms

Publications