Naga_100017g78, gene847 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100017g78
Unique Name	gene847
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:639590..644811 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100017g78
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:639590..644811 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0003824	catalytic activity

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL052	ngnoL052	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03510	NO03G03510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna884	rna884-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna884	rna884	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna884

>rna884-protein ID=rna884-protein|Name=rna884|organism=Nannochloropsis gaditana|type=polypeptide|length=1455bp
MEESWQILSASTLLKPDGGGRWRRLTRFEAEQRMPVEVHISERTGLRVML
ARVAGPLVTCLVCVATEAVDHLPHWRQDDGLMHALEHMVLAGSDAFPHKG
ALEEETLNAAFSRASPAPSTVPVAPSTACSAPPGSVAAPADSLPFLFPPG
GPVKALHQVDYTGYTLTTAGPAAFLALLPVLLDHVCFPLLSEAALTTQVR
HVDGRGRDGGAVYEEMLAAELMGEEGGESSPRQRLLEALYPEGCGYRAVT
GGRCSHLRMLSREAVRAYHAEYYRPENMAVIVTGPVETAELLAGLEGVEA
KLLGAGRGREAGPLSGGLRGQEGGAGAARRSYAGLASTGDSASGLKVAKR
PWHHIQTIALDVVGKGESGPRFERVTHPCSALPPASPTALSSGLRNLPYH
EQTQPRSQGEEWGARQSQQEGQVLLGWLGPFWGDFEANLSIRILWLYLLE
GPTAPLRTALVGEQGLCREVTFAVQEGRPGSHFLQCDGVALSAMERVYPA
FIEAAMAIAGGTEEEGGEEEAEETHVDMGRVRALIHRERVRYLQDMEEDT
HASLTSLLLYTFLYGKRAGEAKEGEHATAAVGRSPSLVSEAEEAAQIKDH
VQNTISRLEALPCREGSAEDTRYWRSLIRRVLLDARKTVVVLARSSSSLA
QARKESDEQRQEEQARRLGPAELSQRARELESAEEEMARPCPPHLAEMLL
TYASTLMPERNQKMGGDWGNNLPTVTLCTVRNVVTPSGKIKFEVFDSVET
VGRENTETQRLPSQDFVAKGVDGVSARAVEVAKALHSDGLGSETCESPGP
NDRLPFFLQWDHLGGTDFVTVTAWLETSALPDHLRPLLELWLEVLFELPV
RQEDGSLWTSEEVTRYLQADTVSASSALGTGRSNFYAGIWSQAASISLKV
EAEKYWLAVRWLRNLLYRTELCPDRIASAAGKLLADIEGYQRDGMSICSG
LMRGLNFDAARSNHAATSFVRQYGVLTAVMQRLGTQPTGLLTDLAALQET
LTQAWNLRIHVVCDVLAQPEPVRPWLRDFLPLSQARYAVKALHIAYTDSE
SGRQKQEQRDERKIPPCGVFGSPNSDAATRESDDVTLPPLSVTLSSVFCP
VLQSRHLRTAECLNPSGKGLLISSPAIDAGYLVQCAPFDPIGDGLSYGSA
GYAALLVAMEYLTRHAPLQHCQASHVTVASRGHAVETRADAAPSTSPGTG
LNVEVDGASTGAAAGTSLRSIHPCSYELTCSPEQGILTLSFYRALNLTAA
YSEAQDVVRSYAGGSLEVDTRALARAKSAVLFEYLDRIWTRPAAAQQSFL
NYFRGTRPWFCTETMAAVQNVSAPEVVRAIRRHILRIFDVTRTSMVAACP
SSQALALKFDLVRKLGRPVVESETIELCLARMAADEEAMSEIEGSTSDSD
ASLAQDLSERGNIGGVGGSVRSVKGWVGEVVMRRQDGLFFAAAMAGVAIV
LAKKS

Synonyms

Publications