Naga_100153g7, gene8262 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100153g7
Unique Name	gene8262
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:160996..166101 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100153g7
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:160996..166101 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL068	ngnoL068	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region
ngnoL067	ngnoL067	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00590	NO20G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna8524	rna8524-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna8524	rna8524	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna8524

>rna8524-protein ID=rna8524-protein|Name=rna8524|organism=Nannochloropsis gaditana|type=polypeptide|length=1440bp
MVEAWLQRSREPRFFAVSFSWRFGFLIAIVIFIFLAEAGKAQGETLPLYA
TKIASSNNEEDTVQTLAIDADGNAIVAGSFRSESVTVADTATLANQGPPG
TSDVFVAHFKADGSLNWAANWGGNHDDVVVDVAMDPSGASAYVVGVFKSP
KISFSPVGSETNDDVLENIIYDADTLPTNVFIVKVSSAGKVLWRTQTGDK
NIASVSVDSDSQRVYVTGTFPSYLATRNDDDTWKALESSLPLGVVDDDMT
DDGGPEETGPVEQAGGSPSTSIWAENPFHKEGTATPAPDDGYSTDMYVDY
YSSVTGELVDGTVFTGDLDEIPTDLVLEAGTTTPFVTGFSESGRVRLAPN
LALTNTDSPLPGDHYGFVAKLDPTGKLVVWGKTLGLALGSNPLRLAVDST
RTTAPWTMLYVTGTFGSPEMMALMESTAGRIGSSLFPSLVRMNANTGEIV
WVKGLPPPQQVGVDYTGAITVAGTFKASVSFSYDIPNLIARSANGDMYLA
RMDGHSQGEVVQVERFGGGSTGKYTVNDLAVDPAGNVYWAGNFTGGAIKF
ADTMLSTPGSGNIDGFFGRVAHPLPGRTAAPQKVPVPTMAPTRRPTTPSP
THSPTTVEWAKAQALLTKPPTKAPTRRPTRAPTSRPTPRPTMSPTAQSNT
PAPSFPPTQRPTRMPTQEPVPVRNTLSPTKAPVTPLSIDSLSSGTLPTLL
DTSGSSAAVAGTNVDMVLTYAGSQTTILEFQRSLYQLFRPYATSYATFIP
SVAALNRRRMAGSSPITPASTLSLQELEYQASQTRDGRSYERSLRVNRCT
DTKTAKFSLPFYIEAKNRAATAKILNLLEDMINGVSAMDSGRNIFDNTVL
CSVSYSALSASPLIQADDSFAAPQMVPATSGVETMGADGAACQDKKGIQA
FSLIMGIVLGLLGVMLSVGVFYVVQSRRLQRPARVTEPQSQPPRSFFTGF
KGLTPKTRASLSATGSGAIASPEELTRQLEAEKERWRARHQTVLAAERGR
LKIEHEAALAHAVKEEADRLKLEHSEELAAVRRHVAQGKREALPFEKESW
ERERDRIIAAAITREKKKWQAEERMDTKEAGSDQILADAVNAERRRLEEE
HESRLAEAEARWRQEQETAVAAAVARAASEAKRRQGKEEGRVDVATLLEK
ERKQWETEQAEALAAQKKSLKLRYATTLTEEMQKWEREKASLLASLSAAS
SGDLAGATTAAILTEREKLTKEHETALKAAMAAEKEKGRQEREAELFAQK
NTLKQRYGQALMQEREKWRQEAQEAMEEKRAAWEKEHAQSLNVQRSILDP
NHPAGIRAVIDVEREKWVAEHAASLAAALASEREVAKQEHSTALQASLAA
QRKKLTEEHAKSLAQALSGAGVDSTSLVDARAQWETELDGERVRWQQEHE
AAMLAQKNELKLRYATVLAQEKEKWMQGSSPPHAPSRPSR

Synonyms

Publications