Naga_100140g5, gene5920 (gene) Nannochloropsis gaditana

Overview
NameNaga_100140g5
Unique Namegene5920
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:643666..653637 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100140g5
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:643666..653637 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005515protein binding
GO:0003677DNA binding
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL023ngnoL023Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02490NO14G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna6129rna6129-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna6129rna6129Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna6129

>rna6129-protein ID=rna6129-protein|Name=rna6129|organism=Nannochloropsis gaditana|type=polypeptide|length=2742bp
MSDDDNDSAQGQSASLNHVQGDDEDGGRGGSRARRKNAKYFSGDFKDPGS
DFEEEAQEEDEDDRSSFAAQGAGSVRGANSSAGGGRGGGGGYASAPPPSK
PKSKNRFCPSCEEPVRPSETVCQYCDYIFSSANRAQDDTPVSDRFPFEPE
REEDGSLKIDLILGRRLLQKGVASAAVQHAQHDKFAPPGSPTAAAAGAAG
SASVASGPGGSKKHPLQHHRAILKHKDARRERYCYEYLVKFKNASYMKSR
WMTFHQIDALGNRSKQALTRWLKKVEKGEATEELENETFDTNYCVVEKVL
DCADAEVEVSDDEEEEGEGEDGEEEKEEVAKETTKANGKSTKGSQKSKAK
QVEEDAAQAAADDRVRTVNPFVEGMPSGKSWSAVVRCRFLFNQIVEDEYS
DWFYDPVDTDLYPDYLSYVAQPMCLSEIQTRLQQPFAYDGNPQAFATDMR
LVWANCEEYNGGHPASAAFQAGQMFSKKFERLYLSWVMAFQKEAVPWEDT
AARPWEGGCRVCTRKKAPQAERHEEEEKPELLLSCDNCEAEYHTFCLSPP
LGDIPAGLWWCPRCEDLDLESRGHTHSHASEEAVREKVQRGLKERKTVVK
RLYLVKWKDLGYGMCTWETPEDMNDDKKIEDFHKVNDSAPPEAAVPQEEL
AYHLKKKQYLSLCRPAIRVGDEQGELEFQVYAQIRAFHFLKWGMPPPPAL
LHDCGPLVHAYACLQEKEEREEEARRAEGGVEGKEEDKKEDHAAGQGMRE
TEQAVAICLSSIVDHVAKGLLMPSPGPAQKGGEYDVSFYRKPGETLSLNI
GNYQEKVVVLGFRPRDDGSKAALERSERVRENDVLVAVNGESVLDVPFRE
VIDKLGMTSGFMTLRFVAAQYRDQYLQHYVKNPSVPEEEARHAALQKTAL
SFPAPLPPSAALTGLYRTPSSFSEVIARVAHSEGGRTQERWTARIRVKDR
VQELGKFKGKKEAAAAFQAAVAKYYGGEEAAQRHCAGLEEFLAAKGEENE
DGATVEGQKNGVGKGKTKPEKTCEEIDFPVDSDSEAEAEMAALAAKARDG
PDSLSAWNTLGQMSRLVRAVRHVETAPDREKWAGALYYERDPPPPPKPFF
DSEDEEEGEEEVGKGEGMDIATSRNNFGKVVKWVEQLDFNTGKQVRLYES
ISQASKICQTPSHKIQDVLSGSSLEAGGFKWRYADAATVAKAKVQWAEQK
KLSNVHGKAGDGEEPLWKQRLPTEAKVFKDGNKLRDYQLLGVQWLLKCWY
QRRSCILADEMGLGKTVQIVTMLEHIYSVDGLPGPFLVVVPLSTIEHWRR
EFEAWTDMRFCMYYDVGGARGMRDVMREYEWYYRNRSRRILKIHVLVTTY
EALIKDYEEIGEIPWRCIIVDEAHRLRNWKGKLHECLKVVSQTGLQRYGY
QHRVLMTGTPLQNNTQELWSLLHYIEPTKFPDMEKFNERYGRVETVDQVQ
QLQKRLEPHLLRRTKEDVATDIPAKEETIIDVELTTLQKQYYRAIFERNH
AFLYNKAGMRGLLPKLMNIQMELRKCCNHPYLVEGVEDAEMEKLQETIMD
PVALETERMERGLVASSGKMVLVDKLLPKLRREGHRLLIFSQMIKVLDLL
EEFCERRGFPVERLDGRVTGNQRQQAIDRFNTDPDSFVFLLSTRAGGVGI
NLTAADTVIIFDSDWNPQNDVQAMARCHRIGQTKEVQVYRLITRKSFESE
MFERASKKLGLEHAVLGGHNFRDDGGEGGSEGAVANMVDKPTNKEMEQLL
KQGAYALLDEDDEDAKEFCEDDIDKIMKERTHRVVLDAPGKTASWLTKKA
GAFKKRAFTSSEGVAAADVDVNDPDFWVKVMPDLKTPESLDRRFAALGGG
GEDEGEEEDEEKGGGAKKEAAGEFFKDLEDLVKRMIDLHNKGKCPTRDRE
ICTMLLFKVSIKGDLFTPEQKSLVAKWRTSLEGTRVRTCRQDVAIDTDDD
EDGSLSGEGRREGREGGGRDRDPSASARSRRLRRAAAREVESHTDVCMVC
LEGGSLLMCDGVCKRSFHTKCIGVEDNPVKEWLCEDCAQGMMRCLICGEL
GTVNEEVQKCKKPQCGRYYHAACLEGDDRVKWFKSQLGKFYCPQHQCTVC
REKPGIKPDKENFFLSCLKCPSSSHLMCGLGKPMKVLTHRSMICEAHAEE
TGAEALELAAVAHIKYPDRRGMRPTMLVLKEGKLVNPLTGEGERGDGEDT
DGEGEGGEGGENGTGRRRRRRRRGTGEGGPVKRGRPVGSTKKAALAAMEG
GEGGEGGEGDPSGAAPVKRRRRARAKKVRPEGSNYVSTLIGPFRGETYRL
QFKVKEKEKAEVKREESGTCPCQDMARKEDFIQCEKCQIWYHLSCVNLTA
KEAAQITHFYCTVCDKEVEEEEARYDPLVVVTYWRSALQERVASRGGRPR
KEEEGEGGNEMGHEQGEGEGEEGGMVVKKKPVVKRKRAGSPKMGKAQLPP
SSVDSSEGDEEDVEEEEEELMEVSSMEDSPTEPESGKGGKEGVSGRKERK
NSPAPSAAAAAAGGDASKKKSQHARRPSSAASGVVGGGAGAGKGKGGGNR
SGRSSPVVKKGEEDAPDKKPSRSSTPSPSPRAALHPPPASVDGGSLNPHR
LYCICRQPEREGDQFIGCDDCQQWFHYGCMGLPADIVLDNFTCPGCEAER
ERGKEGGSGRKRGREGLAKGQLDGRTGKNGGHDGRRRKEDALGEDGDLAG
EEKSPVLKKAREGADAGGGKVGREVKEAVGEAENSPLAAAEA
back to top
Synonyms
Publications