Naga_100180g7, gene5764 (gene) Nannochloropsis gaditana

Overview
NameNaga_100180g7
Unique Namegene5764
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:226637..233928 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100180g7
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:226637..233928 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL024ngnoL024Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL023ngnoL023Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00760NO14G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5966rna5966-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5966rna5966Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5966

>rna5966-protein ID=rna5966-protein|Name=rna5966|organism=Nannochloropsis gaditana|type=polypeptide|length=1399bp
MNGQRKHVGSLFFCPWTTLKGGFYLLHVAWWTNDRCSCRRSTATLPRNDL
GPKFVRTLTKKAHNTLHDVYSVKTKMWQMTWWQGSKRKPMPSGNGTPKRY
LPTESSLEDNREAMDYRKLGYQGSSGGGSSPGRNGDVLAHGERGRSRASD
PGCPQHQDHATAPVSPLLDKAAVVVRNNATALESLSARGIWLLLFLPYLT
LALALLIDAHPQYRFTSGYAFPTGETVGPCHGEDHIHDGCVRVVNANYTA
LYSPPFRLPLRSTILAVDALVNARAPLTPFEGRVEPTPARERLLTTPTPV
PLLSVAPPSPTLSASTPSSFPRPSSRPRFPLELTEETDDDDSSEGGELSV
TAKLEVPFQDGSGWRLLCQGPSVGWTWGEEGAEGGRRKGRRRRLAAHERR
ERALARAPSRQLEDLPGFPPSSTSFAARLLTVVFDAPGMEYRGFPSYRLS
IVVAGPAAVSFAPQLGYLIHHDRFSYLYLLFLLRAALLLLTLLGLFRWHR
RLRREKPGGLRTWLPEQHYVGLVLLPALFLWQNPFALLLGYWGRPPSLLL
FLADLANAAGYLTMLFAWVCIVDGLRCYETSKEVWRRALALSPPTRSLPP
NHLALHTASFPSPSDAHNPWQHQQSFAQPHPSPIPAPPSLRPSSSSALPW
PPKHHPLGDYFSDFFLPKLALYLFSLCLTLFLCVLRYPSKFFQSRPPLSS
STTSSPASVGINTEDSGLPPSLRRVYALLSFLLVLLLAGWYLLFLSSVLL
TGRALRRQAYLRTRSQQLSFRFISQQVFLILCCKLTLLVLGTLRLARLLF
GVGAGGGGGKSWEGALSGWSLYATSSFQAPMGELLFISITAYLMAFIFSP
ATRWSGSDVGGGGYPHVSLEAELPPSLPPSLPPSSSFQSLRSKLLPSPKP
IFCLETACWLMEASWQAYYELDARSLPSSPSPSSPSSLPASSPSSTSSLP
GRMALGNLNVRMEGYVHDEGTDTRSVLGRVGGNEGGGGGGRGRGRGGGCG
RKGALLLAFRGTLSSRNMLTDLKMQQVAFPSDRVLRVVEEGLLSAVESAL
AREGTEYLYCTGHSLGGALAQLAAYDLSINFPALRHIQVYTLGAPRVGNP
AFSSAYEARVPATFRVVVDGDLVPGMPKIFGMYRHSGVEVLVDAENGGNL
IVSPSAVEKWLRLRNRTSTTNHSLTTYRDCMEACFSPDDLVHYLPKVLGQ
ENRTSADEDLPEWLRTKNGLIHHAFALYMRRVHISMVRFNWLHTSREIFV
GKHNKKASVFHAVKHLPGPLMGLAMEDDGKRNTWTADEDKILASLVEKYG
PKKWGIVATYLPMRNAKQCHQRWHYVLKPSISRETWTEKEDYIIYHYQRL
LGNKWSHIAKYLSGRTGYAVRNRHAFLVKHYKGGKVPVPPASSRRTFRV
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Synonyms
Publications