MSH6, gene5354 (gene) Nannochloropsis gaditana

Overview
NameMSH6
Unique Namegene5354
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:240081..245230 -

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100016g68
Gene biotypeprotein_coding
GeneMSH6
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:240081..245230 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL018ngnoL018Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00730NO11G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5541rna5541-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5541rna5541Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5541

>rna5541-protein ID=rna5541-protein|Name=rna5541|organism=Nannochloropsis gaditana|type=polypeptide|length=1462bp
MPPVERSTSSSSVKKEIDGRKQASLFSFFQKKEKSDTPFPPPRPTPSPAS
KSVTPLAKNMRCTKINSITSDMSGITTTPSTSIVNKGGSADGSASRVPAA
STYGKEVVGKRVKVWWPEDEEYYGGTITAFSGGGDGKHAILYDDGEEERV
YLARETIQWEDSECLPSAETSIEQKRGQAAHAVTQEDSVTNEVARKRRVV
QDESESEDEINFSSATPVGVAPYPSFPSSLKEFSGKRARLESPALSNGEG
EDNNAESKGRRDRSARTAFAGLGLGNDSFAPSEPASAPRANEGSSDSQIR
GTPASASNSTVFNTPLSASSGRARLSLGSSGGGSVKKGRASWVEEEEDEV
VAASHDRPDGVLEYGKHTHHGLKWLWDPHRRDAQGRSPQHPDFDRRTLQV
PAAFLAKETPAMRQWWEFKAQHLDTILFFKVGKFYEIFHMDADVAVRELD
LIYMKGEKAHSGFPEIAYGKFAPLLVEKGYRVARIEQVETPEAMKEHNRR
CGPGAKRTVVARELCSVLSRGTRTFCYLDEATFEEGAGSDPTGAPLLIAI
KQEKVEAEAGREGEDEGRVAYGVCMVDPTTATFHLGQFEDGPQRWRLKTM
LSQFSPAEILLERGGACASLEQVVRLCAPGALVEMLRPGAEFWDADKAFK
ELKKGDYFPRGSKKKGKTKGDGEAEGESEEGEGLMNGCGRWPLTLQVVAA
ARRDKARLALCALGGVIWQLRRSLIDKDLLSMQSFYPYAPPDVVLRDAAA
PMPEETEGLEPGSEEEDIFFCLGGDEALLFDMKKREEGLQRETLGESGRQ
GGVERKSDHGRYLVLDGTALTNLEIFRNSYDGTGKGTLWEHLNHCRTAFG
ARKLREMLCRPSQRPGVINARLDAVTELKDELSPEADEIRRLLKKMPDLE
RQLARHHALGSVHRAEDHPDSRAIMYELDKYNGRKINDFLSTLEGLKTAS
KVRTILFDSMDRCHSTLLQRLTMTFPDLGPRLDFFGEAFDPAQAKREGVI
TPKPGYDDEYDSAKERIEAVMAEIEIYLKEQRQRLGSQEIKYWGNKDKDR
FQLEVPEAILRRGQPADYEAKSSKKGCRRFHTPRIRELLEELGDAEASLS
EAQRQEMRRLFENFDHDRQLWTTAVNSLALLDVLLALAEVSSGANYCRPT
LVPYHADSTEEAGGSNGAIPAPFLSIKGGRHPCLETRAALGDYIPNDIEL
GVATGQRERVMLLSGPNMGGKSTLLRQTCVLAILAQLGCYVPAEECSLTP
VDRIFTRVGASDRILQGQSTFFVELAETANILQHATSRSLVILDELGRGT
STFDGTAIAHAVVSFLVQRLQCRALFATHYHSLVEDWRGHVGVCFGHMAC
LVEPDEAEQKVTFLYRLADGPSPKSYGLNVARLAHLPSEVIDLAREKSET
FEAFMTQQGHEGSGNKGKGTKVHLQLWLGAEIFALLTESPSSMTVDEKAK
TARALWTEWNAQ
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Synonyms
Publications