Naga_100032g35, gene5001 (gene) Nannochloropsis gaditana

Overview
NameNaga_100032g35
Unique Namegene5001
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:338751..347792 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100032g35
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:338751..347792 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL015ngnoL015Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02900NO10G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna5181rna5181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna5181rna5181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna5181

>rna5181-protein ID=rna5181-protein|Name=rna5181|organism=Nannochloropsis gaditana|type=polypeptide|length=2905bp
MEGGGHQDSKPESLSSTSSRKDEVELKEAAVIIDLLEESEEEEFDYGESE
DDEESGSSVVLESHERDRSMINACARPQRGLTEHVETDVGKKRIIRGAGR
TTSSGKEDIGESVSDGSSWRLTDREDDDDFVGQGMDENGRDLLHNVPSEE
EEDYAIKILQKIGTCRWCRYPVASEMWLRAFLYGDGAQDEAFWTAMRGDT
YECLACLDAYTTARDVLLEYIRNQHGLEWRDTCCREMEGRLQRLESNFMR
MHLEATQKRLISPSVPDSLEDALVFRRFGFALLDILTGARACLADKGVEA
SFVAVMDKVATKVEMTEVLTGRRLPGLYRLLNHPNENMREWARTTAKAMG
RLGLADLRGDQGLHTVLGEWVRDLEEACFAAECQVPQVLGGKGGSGWAGE
GRGSVNQHVWKALRTVLELLEEDEAIAEWLLSEYPILPDMVFAHARTCCA
SFEGKMEAEKDRGGSATDPCNPPTPTPANIIVVLNCFRVLLEKMKQQTWS
HDEASALPVFDWLCHNISIGAKRTQDTFKGIFKSFLDLVPPFLRSLRHAL
DENTSNSSIDRDGQGRTRLINKALQHLVRIIKSFPPNGRVSTRHFLERSL
CQILRDAYDPSLACARTWPLRSIHDWAPVLATALKSSGTLESASMEKIAT
DTVHLILEQHRLEAEDRIEDALQSLLGVMESSGSVSKLCQGGDDDFSGKR
LSPEDNSCLQRGQLSESSSSPSWGSTLLCGRLMHELTRRLPLTSLPPLIR
DDLFKLQAAVYLRPVPSTGVGCQQLDQACNDQTAAFESLLERIVGAHCPS
SSSSLSFGGTCSSMAVASAARIPPRQSSGSSDGTVGRSNVGSNVNPYAVT
QGGMPAGTSLSAVVPLLLVRERKLTASIFSLLVMGASSSSSTVPLSSTPL
KWEYVLSQLPSSWLRGIWRGVNHVLKDLLRVNFLDIVRPPSNLVSLLPAF
FALVLELLERHKRPDKFGHVGAAPPTGIWWRFVAKILKKGYEGCPSNLKD
DRVTRRCSLPNTAMEEEQRDSILSPSLLLSFFKAASAFLSLSSTMQLQET
HSLWLELTLDWGEDETLSRRMPRVHCAVLDFLRATLEAFILRHIPLKQPL
GSRIDATIISASTGDPSENELVNCLGRLKPFLITDDGIHARCERSDVAPS
RPLWLEKEDERDEEEVRIIGEWKNEELCEEQQSAIEAHFDGTSPPRRKSR
DPAVPPPTASSFSEESSHVVSRTNTDSARSCMQPFTMMSKHLKAPVSLRR
SQKSGRPRRPPKTGHASAENHSSDARSDVALSSSSSSLMAIAGALKTVGR
EEDPCLDKDLVPQKEAQQAHRHEKRDPRYITQGFSRFSHRRYSSLTNALN
SSDAVATSTPGEKDAAPLQAREGSSHYPLSQRCNVPTGIGPRRTDDDFEI
FRQLKHLTTNAPLVAREFHRHVLKWNVADLMNDSFSSEAYQQQKQMLRLD
EVPLRYRDSHHYLETWQPLLLEETRSGLGRDMEESLAEAKRAARSQSHDE
RKDLRKEKSNRGWNVAHLLGNKSHGKKRTKDGQFAGEIIRLSLQHAVEDL
EGDGLSTLTFSIHENRPLERLLRSSGSGQAVFVLFPTRSNLKGTSSLDVC
MDSHKVLEEGEVVEDIVKKGRENRNTYAQAYDGHQKVSGAHEQHLYSPSH
EVAMKCHAMAVLLSASENGDALGRNEDKYVFKFRVAISQKVPGTGGLHFK
QLKVGSDWSALGIGGLTTAAREFAALREVLGFRLAPRLLQGGKECEKGTK
EASGAAKRKNLMRLTVVSEVGLRQIWRDIEKRYEAASNPSASPLEVEELS
ERIRSLRKIRVSRRLLSATDIGRKVKFLKKNHKGSDLVRAACGQVLKEWR
AQVRLECACYDGEVTQSVNAVGLSQQESSSQTYEAGTGDRDQQKENVGAG
SPRDVERDVSQIGPSKPPHVSRTSLATETIHCPSHVPLKLWKSLQQQFNA
PQLKAISASCFINAQAVHQGCEVTLLQGPPGTGKTRCIMGLLSAIMHSRP
TSTYYPSHSATNVRPALRVGYRHHQREARILVCAPSNGAIDEITMRLQRT
GLLNAEGQVFKPTLVRLGVVDPDAEEEVKTVSLESQLERALLTNFQKKEY
DKADAEVLRLQRDERDAREIALDARKCRLDHGLHGRNEGEVEESEWLRKA
EQRQRISRSELYRAKRRRWECLKALEAEKSRIRNNLIRDAKIILSTLSTA
ASSQLAEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPR
QLPATVMSPVLQKYKYDRSLFERLEKGGHPVHLLRVQYRMRPPICRFPSQ
AFYHNKLSNAPALEAAEEDADGDLKRYDRVPYFGAYRVFNVSSAREIKRG
NAISNIEEAIFAVQLIARLRVEFPDLVAFKHMAVITPYRAQVRLVEEHLR
VRFGEEGSSLAEVSTIDGFQGREKEVIIFSCVRANPQGGTIGFLADERRM
NVGLTRARRSLFVLCHRASLWTDRSWRAFIEDAEERQSLVDTGGRDFDQL
ALMMLQRISGHTVDCALPQGPRIQGSHSNKMLRQGDKTSEIGTTTIALSP
SIDPPSRTACVTGSVNTVSGDDRADAILKGLLTRCESIPPLSESQGGGLN
TMHASRNGRRESKYDPDTLSTKNDDSGHSHFRPGQLQQQISAQDLAMIEE
QQRNQEERKYEKWKQEGVSKETGAARSASASVNPQQLDTISDPRKTKLSS
LSLPSRTVSAVRGAYSRAGSVHGDIKYSKFEGKEGLEGGGAAALYVPRSI
EKHKSFARRDPHLNQRLASSSPKRSKPTEELVPLGKSKRGKADTDTTNAL
TSSSTATSHGLGELNIRKQSADTTFTIPRRPDYVHSSARTAAMSSYVAAE
AVARGRPAVNISGDKAKGVPLKKSLEGVHGPDTVSKKKRPSVSISSLLKN
MPDVV
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Synonyms
Publications