Naga_100168g6, gene4751 (gene) Nannochloropsis gaditana

Overview
NameNaga_100168g6
Unique Namegene4751
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:671797..676155 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100168g6
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:671797..676155 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL007ngnoL007Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL006ngnoL006Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02700NO12G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna4920rna4920-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna4920rna4920Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna4920

>rna4920-protein ID=rna4920-protein|Name=rna4920|organism=Nannochloropsis gaditana|type=polypeptide|length=1347bp
MAVVSGGRLSCAGTSMPDHDRSMGFSKPIKYPGWDQAEAPWTTTALPNAL
ILPLFLFTGRQAGVLRCGVGALLVGTFAALVRVQQISLWWGMLFLPPALA
LFLSSYEVVFSRPDWVDPEVFGRNKLPAHAPLAYHTSIEAARKAAMSHSL
RSQSENIVLLSGPASAGQWRFKYAPSVSAAPLHFEDPGFPADDWDTDVPV
PGNWQLCKDASTGEPRFDIPVYTNFRYPIPLHPPYVPRENPTGCYRRTFD
VPAALLEKGGRAHLLFHGAGSAFHVWVNGSLAGYSQDGKLAAEFDVTGLV
HRDGQGNVLALRVLRWSDGSYLEDQDHWRLSGIERDVELVMIPGAGSGFS
LSDYTAVARLDSQHEHGHLDVTFQVARHRIFPGSFQVQALLYEDSEGGGL
VGKASVVKDGTSADAASGASPTEVFVSIPVKNPRKWTAETPQLYTLVLTL
STEGPGEGKTPSKLQQAEGCRVGFRTVEIRDSQLCVNGQPLVVAGVNRHE
HDPDTGKVVDEASMVQDIVLLKRYNFNAIRASHYPNHPRWYELCDELGIW
VVDEANVETHGMKPIGRISADPVWRAAYVDRMVRMVQTHKNHACVVVWSL
GNESGDGQNLQAGREAIKALDPTRPVQYEGGGADMCGTGRTSLTDIQCPM
YAVPAAAIQMAQSTRDARPVILCEYSHAMGNSNGNLFKYWDAVWALPRFQ
GGFIWDYVDQGLRHTDRLTGRSYWAYGGDFGDVDGPCSGHGQFCINGIVF
PDRAPHPALHEAKHLQSPVKFHVQGPSSTRRTPMALTLGIENRYSFRSLA
HLTFHWALKSDAGVLAAGTLNVEGKEVGPGQRVEVTQDVGQNGRPGSPSE
PPRKLMSVLAASSPFKRSNGEKKDKRTGGNDSTTGGTEGGIPSAISGLGG
TSVWSTAWVEVTALLKADTPWALKGHVVARETFLQALVGVSEGASGDRVP
VPLLTMPALELRQERTEEGQGPWTAHAAAGEEAVLVVSGAEASKGEDWRV
VFGKRSGRLLEYRVGGVDLLVPQTGGPEHAFLRAATDNDRAGYPVSATFV
TPKWLCDALEPYSPWNVLSYYARWRRLGLCLDGLETSVQEVTPVVHTTKR
VEILVRATVSTAQAGPLLDVQTRYTVYGSMDVKMGIKVVSLYENQAKAPL
HLPRVGVALQLPREFTDVSWLGLGPHETYSDRKRSGLLDVHHAHVRDLHT
PYVVPSENGGRADVRWAALRDPESKMGLLLRCTNGPVHEVEDEGMPEKRK
KSVHAPGTFQFNASMHSVRELEQATRTCELPTWEEVQRLYVHVDHRHMGV
GGDNTWEPDLIHSEFLVPCVGTWEYDVYLSPLVPDEEPSAKACRVLE
back to top
Synonyms
Publications