Naga_100021g40, gene4700 (gene) Nannochloropsis gaditana

Overview
NameNaga_100021g40
Unique Namegene4700
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:537219..540428 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100021g40
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:537219..540428 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL008ngnoL008Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL007ngnoL007Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL006ngnoL006Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02060NO12G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna4866rna4866-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna4866rna4866Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna4866

>rna4866-protein ID=rna4866-protein|Name=rna4866|organism=Nannochloropsis gaditana|type=polypeptide|length=966bp
MRQMFWLFRILGLSLLLLHVIRAFNAPILGTLINPGIDACATDPEGWIKG
PVISDAQEDAVSKVLTAQHNVTFLWGTYQPGQYFGVKSRTTPATVAVGLL
WHGPEHGIADARSECRQEDRIKKYGWTQHDGRHYGRQVINDAAQNVNLVT
EYVRLRSEEEGYWGARILVHPDRQATDGVVDREVATKGKKAQSKKSEGLS
GKDQRAVFLYVAIDCDGAVSASNCLENGAEGLDILIDRRKRSGAAFIRGK
TSDLGDFTLEVGVTSLTATVDIQRDISGSGADGAKDTSPDSPPALSITYW
GGANVLLADLKARLVGEARPAPLKGNRQAQHNRGKSSVLPDEIPANSNVV
VLRVASSGSFQIDARLRPRTPQEREKGGDDDDDEPGSEDVAEIESLLDRT
TRRGLEEFKERFASVFPLSQHGYRGRNFTSEEIEAAEAAFSNLIGGVGFF
HGRTPIRGQFEWEEGGSGGTRVLDSFPTSLFSAVPSRSFFPRGFLWDEGF
HQLILHKWDSELTYDVFLHWLSNMHAHEKCQDLGWIPREIALGEQARRRI
PAEFLPQDVAVANPPSFLLTLEDMLTLSGASADQCEVKDEDGRRSQISSM
SRQSDFLEAIQDRLERWLLWLLSSQRGENLGSFRWRGRGDPKEKLMATTF
ASGLDDFPRASEPGPEERHVDLLCWIIKGCQILSQLAFERAAHSLGEAEK
VQQKRGKKYATVAEELLGALDDLHWNETLGGYFDYGMHSEDGYIGETYPV
RCGNPTSKTVTNVRVERSILMQWDDEGGEGETKICPPDFPTPLGMLSQEA
TLEYFRGPEIAAQHVPRRGYVTLFPLLLGLLPADSHRIRPLLDSLKDPAQ
LWSPYGIRSLSASDPFYHKENAPGDAPYWRGYVWINANYLILRSLWHLTR
TVGPYQSEAKELYTRLRDALLRTILGQYQTTGYFWEQYSDVDGQGMRCHP
FTGWTALVLNIMAEDF
back to top
Synonyms
Publications