Naga_100001g53, gene3906 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100001g53
Unique Name	gene3906
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:736987..740646 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100001g53
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:736987..740646 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL141	ngnoL141	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G01500	NO08G01500	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna4060	rna4060-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna4060	rna4060	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna4060

>rna4060-protein ID=rna4060-protein|Name=rna4060|organism=Nannochloropsis gaditana|type=polypeptide|length=1219bp
MPPYTKAPVSSMALGQATRTIRDYLGAIGKGATGSWDCAHPLGLGLEDGR
NQFSDLLLAQLLDLTSSSNLTEQVPSSGRAWTFAYKECRGVQAEAASALL
SLWVTLEATTRHPCTPAHQQILLRGTMDCLSGLIRGNPSFRHLLFRVWQE
KSRGCRPSVPCVSMQMFCLQTYAQWSSVGVPRRGASNFPDHHPLPRSLLA
SLLHFWSLLAQQQLLQIEAAEYRLLYSCLVGPVYRAAASPAPLSPVRRRG
SKAKATTTLRNMEHDENGRADGDPSEHDREKRGGQAGEEDGDVVPPPAGN
KEDPNVLLLPSMHLLAHAARGSPSFRSFLQASDHHEEHLLLDSLLSLVVS
AQREPSGTQDMVLATLGMLSRLVAGKSGMEHKVFDRKNVQESTEMIYSCL
LPPNGTGALGSEDVLSAAVDVWSDLLASPWVVSILEEGDGLPSFVTRALT
TIGCMVEQAREDGAFSGRIEALIRALRVMFQGSSVGRRCVVEYLFAKREN
ESGATPCLVCLVRVALSRHTAAAAQAASFLERVMSNDPDEEVDGRWRVLS
LVLLTPVREACEQPGSRTCRAKSSHLPPESLLVCQENIPRSGKPDVDARH
QNASGPSSGTLTGDLLVDRLAHALQTVAEEAEVCCEGGIAEGLTAKRPSF
HVTGLLELEWHLRHLLSFAWWLANAPTLPLAPDDSHASSTTRSTAPGVLG
RELVRRISARVLGCIVVAWAHTCFVDEWEGSDLASAQNGRNRGAGVQSSQ
AQTRLLPPSLVQSPLAVGSLEVVVIGCRLLVTIVNGEKEGALQPWSLNRT
AFAEACDPWRWPYILTTSPQISNVLAAALHQGLDRSLLSHLMGLLASIQA
EAGQLGDGGGDGLEWRVIVDSLVRQNHRTRLSSRLAKKEVAELQMECATL
RRDLKAKTREAEMAESQRAALQAKHDREIESVGQDWREEVLSLREAAEIR
EAEQASELKACVTENDLWEAKAREAEKRLDQAMQSHRQVESENASLKEEM
RVLIFKLVQVEEVNATREDERRTWAEKFEEQQLAAAENDQRTAAAELALQ
SANSQLKKAASKLTVLAKAIQAKDEAARRADDRFEKLEKHISDIERDLVI
LRGRLVEVEGENRRLKALRQVETTERKREVQADKEEMERASEMVESLRDL
VRAQMEKIMELQYERKQLLVNLKEKDGRLLQQVEALRRQHHAAAVIKSLA
VPLEEAEDRMASQDKCAYR

Synonyms

Publications