Naga_100216g2, gene3187 (gene) Nannochloropsis gaditana

Overview
NameNaga_100216g2
Unique Namegene3187
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:69645..82359 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100216g2
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:69645..82359 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005215transporter activity
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL130ngnoL130Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00170NO07G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna3311rna3311-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna3312rna3312-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna3311rna3311Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna3312rna3312Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna3311

>rna3311-protein ID=rna3311-protein|Name=rna3311|organism=Nannochloropsis gaditana|type=polypeptide|length=1129bp
MSSFALPCRFLLLVFVLLASLAVARSISGRYPGHHPRIQGFIATLYASPS
SSSSFSSSSPSKRGQFNVRTAALRDPRFRFALCCCCSSSSTSSSSSPSET
TPSKDAALERLVSSLLSLRGGGAQQAAAAAAAVLGPTTVRSGSSSPPHPS
PDGTPLPKHSSLMMESEEGQGDEGREGGKQEFGNTLPRISFGLWPVGRNA
SLWSTVSFGWVDSLMARGNAQPLEMEDLWHVAEEDKMSKLSQEFQAVYAA
EAEKADGRGVLPAVHKEERESPRTTWAQAPLIRTFLRLFRLPLLTTGVLR
LAVSCVQFLPPLLIARLLRLLEAGGGLDVRSGYKLVLCLAVTLIAKTGVE
NQYYHHLSVMGLQIRALIATAVYQKSLRLSPAARQASTVGEIVNMMQLDA
ARLEGVASSVHTLWNGLLDIVVYMAMLVACMGPSMLAGILIMASVIPLNA
VFLGILAKARERTLKSTDSRVKLTNEVLQGIRSIKSYAWETPFLKQVEAV
RAQELSTIMSAAKLRGVLVAFLGATPSIVSMVTLWAYVALGNTLSASKVF
TALALFNQLRFPLLYYPMVIAAFAEGRVALTRLQNFLDAPQVEGQRLAEP
FPASMTKSLLTHEKVATTLAGAHSGAERGQGEGVGIHLHDASFSYAVQAN
RPAPGAQTAWVPNEAFRDCVLFGSPYDAVKYQRTLDACCLGPDVARLEAS
DQTEIGERGVTLSGGQKQRLALARAVYADADIYLLDDPFSALDAQVGRQV
FENCLRDPKGPLAGKAVVLVTNQLQFLPYVDKIVVMGPMEGGNGDVGIID
QGRYWDLIARGHDLESMLASSATAAAAASPSPSHDETERQGEHGHHADIG
VAAAAAGGASGVVDEQHASYHQLHASDEEGMEGEPLLAMEEQGVGEEVRE
EGQERGKLMKEEERITGAVKAKVYKAYLGAVRSPLLILLAVISFVVANGT
QFIQQAIIAAWTSDPLHIKRPARVYLLGVSSMAAMVAAFNYLRTYLSVLA
GVRASDYLHHRALQKVLGAPMRYFDTTPLGSLVQRFSSDLDQVDQQLPGT
LGMFITCVFQLVGTLGAILAATPQFSVALFPISWIYLSVMNYFRAVTREL
KRLDSLSRSPIYSHFSETLVRIEEGIKTG
back to top

protein sequence of rna3312

>rna3312-protein ID=rna3312-protein|Name=rna3312|organism=Nannochloropsis gaditana|type=polypeptide|length=1145bp
MASVIPLNAVFLGILAKARERTLKSTDSRVKLTNEVLQGIRSIKSYAWET
PFLKQVEAVRAQELSTIMSAAKLRGVLVAFLGATPSIVSMVTLWAYVALG
NTLSASKVFTALALFNQLRFPLLYYPMVIAAFAEGRVALTRLQNFLDAPQ
VEGQRLAEPFPASMTKSLLTHEKVATTLAGAHSGAERGQGEGVGIHLHDA
SFSYAVQANRPAPGAQTAWVPNEAFRDCVLFGSPYDAVKYQRTLDACCLG
PDVARLEASDQTEIGERGVTLSGGQKQRLALARAVYADADIYLLDDPFSA
LDAQVGRQVFENCLRDPKGPLAGKAVVLVTNQLQFLPYVDKIVVMGPMEG
GNGDVGIIDQGRYWDLIARGHDLESMLASSATAAAAASPSPSHDETERQG
EHGHHADIGVAAAAAGGASGVVDEQHASYHQLHASDEEGMEGEPLLAMEE
QGVGEEVREEGQERGKLMKEEERITGAVKAKVYKAYLGAVRSPLLILLAV
ISFVVANGTQFIQQAIIAAWTSDPLHIKRPARVYLLGVSSMAAMVAAFNY
LRTYLSVLAGVRASDYLHHRALQKVLGAPMRYFDTTPLGSLVQRFSSDLD
QVDQQLPGTLGMFITCVFQLVGTLGAILAATPQFSVALFPISWIYLSVMN
YFRAVTRELKRLDSLSRSPIYSHFSETLVDDNVRAYISLKAADRWLSVRL
ELLGAGVVGIGAVLSVHGTAMGHLGAGLAGLALTNALGVTGLLNWAVRCL
AETEAIMNSVERVQQLVESVPAEAPAHLNALSHAHDLSALDALHRNISSG
GTTGAGMVTRPVRDLQDDASLVASGWPWKGGIYFRRAVMRYREDTSPILQ
GFTAAIRPKEKIGIVGRTGAGKSSLFVGLLRLVELEGGSIEIDGVDISKV
GLATLRSAVSVIPQDPVLFSGSIRSNLDPFQTYDDATLWSALRKASLEAA
FRTSPLGLDQPVSEYGENLSSGQRQLLCLARALLRKPRILLLDEATSSVD
QATDQLIQETIRREFLDCTVLTIAHRTDVWSSSTGLRPFLDGETPSSRHS
CVGQSWRVGPREDKGEACQRLSPRCHCQKQYPRRRQHESRLDFVIGGIKC
TVAGKSAGWTIKQGLQVGRLWQDHRRCILAWEYAYAVKQWMRWVH
back to top
Synonyms
Publications