Naga_100044g25, gene2500 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100044g25
Unique Name	gene2500
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:798253..803122 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100044g25
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:798253..803122 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL117	ngnoL117	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G03360	NO05G03360	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna2614	rna2614-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna2614	rna2614	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna2614

>rna2614-protein ID=rna2614-protein|Name=rna2614|organism=Nannochloropsis gaditana|type=polypeptide|length=1319bp
MVTAPLNGIANVPFRFLSLSKTVVFPPKKQTHALKAADGRPLEGYTVQGV
FKQNWIRKHVTQLPSAAILLAPFDDAWSTGEWTQREHALLQDMERLRQQV
GPRDVRIFIVLVQRAASAAGDRESEERLLGFRRRAPPAFEANKMVYVLQD
PKDLSHTAPALRRLYKHVRDLSSGYYFLHGKRVKRWESTLNRHAQLPLIA
RYRLKQAFCKQRELAGSHRPSAPHDGKFAALLANDLSPDKGPRLSWPLYV
GGRPRLTASNLEGEMSEADLQALVLVILESEEARSKPHTEIILRLLTCAV
TCDPSRPVRNRFRGMQHLHLANELMGVDRLAEAWPHYCAALRRYAGDARG
GRDGFGGSHGWSLLTTFVLLRMRMCALMLGKCSHYLDLTTQLLSNGLRES
VREEDRRLLFQEVLYLVCGLRGRDTPPSSLESVFSYKSKGRASLEISNSE
DWTETCTYNEAQDDSFSSCVASEPMITVLPDAVDVAVGCAWRQLFSFSLS
FLDATAAIGSTCLVLLRLVSHLPSPVQASQLHLSFNKAYIGTICILEDKG
SASMPTPAEDRLRRPFAGSCNLFSSSSPSIVAVDMEHGVARVPVPLLFHP
DEPLDIQMALPLVVNEAIEIGDMLHAVQLQLVVDPASSLSSTPPLECSSA
CFSPLNRALRLNMPSGVAYLDNFGIMTANLFKGPMPRRAKEAPANPLTTL
YDPATQPSSLSVPLQATIRGFPAVEIIRPTAQATLSLSDPKEAEEQLVTT
LVGHMHCLLIKVESHGQILTNPVLYLRSDPPALSYREEDALFFNTCQGQA
VHGPRVSVGGRQVQPLEPSTAVVPLKLGEDMQPGKAIPILSVELDRQAGG
SNVLGKHSSIFVPVWVRPVQEGRLKINMALVYHSDIDSGTGAYALAGPSR
KISMQSCGRQDNTKFSDNIDSVGDTSSNLLLASEYTFDIESYTPFLTAFD
AASPYPASPSSVKSKFPGDLQVDDGNVSEGDSRADADYTFYTDEQVLMRF
LVKVVQPFSLESSSGGGRLRIEQVIWYPVRADSEPPVSDKDRGRILYSST
NDVCGRQNEHGMQSQDTLSLTFPFLCPDKECNQALPLGRMHLYWRVMPSS
LSTTRPPKTFERSPEALIKDMLTHISWVSCTEVECPSVEVVAPDVTVQMQ
VPPEATVGRVFRLSWTLCNRTDRPLALRVTIKEEEGGNPGLSTEGALLWS
GARERVIHIVPAEAFSLSYCIMSVLTGPIALPRLLISRAPGANAARKTGV
LLLCKVNPAILGTYSFFPSRLTISEILDMHHRVRRQTICTLGKSVFLRIQ
PDIFETLVCVSCIHPKKEI

Synonyms

Publications