Naga_100002g30, gene1899 (gene) Nannochloropsis gaditana

Overview
NameNaga_100002g30
Unique Namegene1899
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:629295..635531 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100002g30
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:629295..635531 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL106ngnoL106Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03600NO04G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna1988rna1988-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna1988rna1988Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna1988

>rna1988-protein ID=rna1988-protein|Name=rna1988|organism=Nannochloropsis gaditana|type=polypeptide|length=1996bp
MCTNSQSYRRARSKSMSTSTSPGRLKHEAAGTTTPPNKGAGASKLASTEA
PRSITTANGHHAAQLSIDTCPRSGSEGGGFGGENSPSPLPPPPVPQSSPL
PPTGKAGAGAGCSSVGGVSASAAQPTSSSLSGHQAAPGQGPGQSVSGHTP
VPDGGAEDIVSNAPVSSVTTAGVVGQGEAGMRGGGRGNGRLGTAPLRRGG
HGEAAGDFTSPRPLHPGSHQGAPMPSLPTRVSSAPPAENVQVYESTQGYY
QHAMNSKQAFPQRRQHGSVHPASSAMRSPYAIAQHHQQYQSPSALPPPPS
KGQEEGAPSQRGQSNVGAKGLASSQESTPSSSPLTTLRGTGSPKQHPSQH
PPPPLPSHQHQHQQPPYHPKSPAMGPRMAGPPSPYPQPPAPVLAGLPLYG
TGALLKGGPHHGHQAQPHHLQALPGHPPMSPQQGPGAWLPPKQQGPQHLS
RGVDPQTGHHGASSHHASHAHHPHASHHQQASQHHPSSAAPAHLSQQHHG
HNALLPNSIRRGSVPTGGGSGASSSGYEHGHHPSLPGGGAPRSYPHPHAQ
PHHATSPLPVMGPRGHSFPYAAHQSHAGGTPGYYASSPGASGPLHGHHPQ
HFQPPPLPPQQHQPQPPSHLQQHQSSPQHVHQPLLHQGGSTGLPGGRYSG
PPARGYVGVGSSQAVMTSTSSAHYSPTFPSQTSTPLPSSPNPRPLVKRES
KALAILDKDNKIVKPSTGTPTSSTPLGSPSLGAVEGASNKATASPKGLQS
LPQKLNIEPTASSDVDTPPGTNITSTSESASLPLQADTGAVEAAVKASTG
PDIAEKEEAGLRAPGSTPGEKTNPSPQQATSSEARAEETSVSQGAPGAKD
GTAPAATSRELKESSLKTEKEIGSLAETEASKASLAMVPELEKGDDDISK
RMAGVSIVAESPLPRSTVSKPGKEIRNSTEESCKEEAVEHLPAKKHVYVK
AVLESLKPIDMSQPAELVGRLQVTRITGSSGLGGVGLGMTRTSGIGSSIN
RSGPSITTLEEGPWVRKPLSMDRKSSDSLSGSRNGYGGLGGASPGGSSSG
SGAGGSGGSAWRRGEQVPIQKSREAGGGNTSRAGPSADFARRRENVGLAR
SRNAWSPQRDTSGLEHCEARVRGLLNKMTWDTFDKLSTQLCGIEIDSKDM
LSKIISLVFDKAVDEPFFGEMYATLCVDVSKKSGEWSVIRTGQDLDKNGK
YFWTDDIMVEKEIVGPFPSREACLEAAISDQEPIAQARTQKLRLCELIIT
GDKFVKVLESMEGGSGAARQYFTVFRALTEEEEGQERVRDRIHGGFEDEI
SAMEDGHRATTFKKLLLKKCQEEFYKENNYDDMVRSTSSSGASRQELAQR
QAEEEEARMKSKRRMLGNIRFIGELYKKKMLKERIMHECILKLLGFVEQR
GDRPGDRKLVKRSTGWDEESLEALCKLLSTVGEQLDEVKCIAGDKQRTKG
RPPPEHHEKDITFYYKQLRDLSVDKKSGLTARARFMIKDLLELRENKWVL
RRVEVKATKTEEFRRGMEASKSGSSSPSGSDGRSGQHGGSGGRGSAPSPV
LSRQGSLDKSGRGTAGGGGDKRSLRGGVGETIGRDRRGNIPPAAMDRRGG
PGRNISQSPMSDHGDERGARGSLSSNCDSKAYSRPSMGGIVDGPGVSTRS
REEVDSVVQTVIAEFMSLRDEAEVEASMDLVPRLVGSEVAANKILGRLID
CKDNERGPLIQLLLLLIKSHRIQSKDLKGEMQLVMETLEDLLVDVPHVYD
NFAFAVAALLRTKALDFAWFQSEARGALPEEKAFTRLMTAVFRAYDADRR
APWSWDLVKSAGEVLFAAYHERDRCQFMNFVEEHQLWATYVEPLSGKIVE
QAMQKGGTEGILAWIRSLEPSLRNNVPFTRALAYRLLVECPKVRNSTWPQ
PAELQTLFTEIAANADPRLQVACLHGMQRFVIEFAATQEKKAMLVSLFDE
LVRSGAVLPGTLSAWEQDLGSTPDSALASDVVVDVMNKLGADPVVT
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Synonyms
Publications