Naga_100002g98, gene1835 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100002g98
Unique Name	gene1835
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:471452..476030 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100002g98
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:471452..476030 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL110	ngnoL110	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G03680	NO04G03680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna1922	rna1922-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna1922	rna1922	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna1922

>rna1922-protein ID=rna1922-protein|Name=rna1922|organism=Nannochloropsis gaditana|type=polypeptide|length=1399bp
MSSSFSFAIDRGGTFTDVFCVLPGNGFRVLKLLSEDPANYPDAPREGIRR
ILEQETGVPHPRDEPLDTSRIASIKMGTTVATNALLERKGERFALAITAG
FRDLLHIGNQSRPSIFDLKVRKPEVLYERVVEIDERVVLAAEDAASDCDF
VGVTGERVCVEKALNEDIARQQLQSLYDSGYRSLAVVLLHSYTFHRHELI
LGRLAREIGFKQVSLSSQVMPMVKMVPRGLTTCIDAYLTPVIDAYLASFK
SGFDARLEERVRVSFMQSDGGLAPMNNFSGHHAILSGPAGGVVGYAVTAS
GRAGRESEEAAQAVIGFDMGGTSTDVSRYDGAFQHVFETTTAGITIQSPQ
LDISTVAAGGGSRLFFRNGLFVVGPESAGAHPGPVCYRKGGVLAVTDANV
LLGRVVPRYFPHIFGPREDEPLDVTAVQAAFADLTGEVNAFAAAESTQAR
EGGGEVSRVPKTADEVAYGFLRVANEAMCRPIRNLTTMRGFDITTHALAC
FGGAGPQHCCAIAKALGMRRIIVSRFSGVLSAYGIHLADIVVEKQEPAAG
KYDEESLSTLEARLDALEKAAREELVAQGFAEDAIRVERFLNLRFAGTDC
ALMTARSEEVRTGGRQSGGGEWDGGRLGSSGMSQGRDYRSAFESNYQREF
GFKLEGRDVLVDDVRVRVTGRGQSEARFRVAVAGEGEKPRPVDYGSVFFE
GIGRVETPLYKAEGLKAGFVVPGPAILMQEVSTVVVEPGCTAHVTSEGNF
EILVGAVEEKRITTTLDPIYLSIFAHRFMGVAEQMGRTLQRTSISVNIKE
RLDFSCALFDETGGLVANAPHLPVHLGAMQEAVRYQLKHWAREGLREGDV
LVSNHPQLAGGSHLPDITVITPVFDEGRLVFFVASRGHHADVGGLAPGSM
PPMSKRLDEEGAAIVAFKLVEGGVFQEAGIIALLEAPARVPGCSGSRNLQ
DNLSDLRAQVAANTQGRMLMQGLISEYGLGVIQAYMQHIQDNAEQAVRAM
LTRFSLSQELPEVGTVGAEDFMDDGTPICLEVTIDRARGSAVFDFAGTGP
ELYGNLNAPPAVTASAVIYCLRCLLPDADIPLNQGCLVPVEILIPPSSLL
NPSPSAAVVGGNVLTSQRVTDVIFRAFGAVAASQGCMNNLTFGDASMGYY
ETIAGGAGAGPSWHGESGVHTHMTNTRITDPEILERRFPVILRQFVLRDD
SGGKGVYAGGDGVVRALEFRRPLVVSILSERRAFRPYGLAGGGDGARGLN
LLTFAGGAKSSRRLVNLGGKNTVQRHLVPPWQQRRWQPGRIQSHPRIGLI
GDMWKKYWSGELGHHGNAYYYRASSRLLRRCTVKAISFSIADRFVPGTIA
LYEESVHHVIVIIERGGESRLFEISVVRWAGRRNWNAAKGKTKLYNLCA

Synonyms

Publications