Naga_100024g17, gene1554 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100024g17
Unique Name	gene1554
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:1068899..1074397 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100024g17
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1068899..1074397 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL091	ngnoL091	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G01350	NO01G01350	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna1617	rna1617-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna1617	rna1617	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna1617

>rna1617-protein ID=rna1617-protein|Name=rna1617|organism=Nannochloropsis gaditana|type=polypeptide|length=1832bp
MGEDIEVALSRQGHCAWGSVSVPTVVARVLDEAVMGREANMEGLEESERG
VVSVFDTLRLRVHGSWLNEPRPLLTELVIPRLRRHFEELTVGWTRGQGGR
EDGEEGEGPSLLTLQTGLRAISAHLRDYGGRYSTGERKTFGRVLFRHAYQ
MDRDFCPGGLLGEETKGTSLAACRRQRQQGCMAATLYWYLLDWSSVLVQQ
AAKAFSTSPRTSEREDNEHQLEVASILTPAGELLLFVLCQLVTLHLRTPS
TLALQLDVSPAGIFRPLLNSIPFSDSSSPSLCSLWLQTYNHAKIIALAQT
NLACSRGGTASATRPLGFWSWLLHILRGRPHLNHYIYTAPALRESLIRHD
LEEHVRVAGRSNNELPPGNMTNGSKPVEGRNPRRAKDEEWNETPLQQDLG
TIEGMWRLVFESVRLELLAEKIDGMSGRQRTTEGGAREHFSCWALVEYMI
AASDNLNLLSQHRQVLDGGLSSDQEVMGRHRYLALLVRRLRTLLKVWQPD
GDLIARLWLSLLQTSATRLKDASPPNPTLSALPLVKTLVRTCCRQAALAD
GTPGTSPDTTPLWGRDWSIPRSLLWDLADPRYCALPSYLVLPPPAFLRDL
AFGDAVRRLVSRGSDELLLLASCLLERHMSMLKDAGARRDFLVSLLPRLE
TMTSFSPSIGNRERYASSSRSLELAEMAAGAKGRGDGMGGIRDDDMGNVA
QNEAKRGQLLGLHNLALALLVLVDKGDAEQKVLLNFWRRLKHFTSSCSAR
GDGGVQNAEASLALSVQFLALIGPSTEENIDFLHYESLLDSLWQWFGVLG
KMTTTAPRPMSSFTTSNIRINNFTGIQDVAAGNQRYSPVVLWSLLQGLAF
AVQLSCTFPFPPSHVAKLLGTVEGLLTQYRELDDAALGLLLRMYRCVCPL
RKVTLLRDVSVIPLFEKVPLFASLVKGARNHTFDSGTLLVSTSCNRGGEN
GREEQEIFASQMSAPSTDLLQALGRLTKECWEVGGGNDNAMDPSPVPSTA
PYLMSASRRVHKHLHSLPALQALAAAHALTHAKGLKAPDFPLLRASLESG
TATYCDRQTKFLRFLAPCYYNAYLAYDLPCFPSLEGREYPVLAAWIGLTL
EGASWVEAGGAALISTMNIMGRADVDLGNGGMSDIFPERYLMQWYWPFTI
RLFTVFKSSSSDSTANRGPAFPPPGDTVASRLLNLEENFRSYIHIPTSKE
LSYLKTRSRGPFLSERPLFEHDLLGRLLLLSNVAIAVAPISSPQQSTQVR
NARKQQILRLLAHVGAATRLLASARAVKTNSSTPNLILALRPSHLLAYAF
ASLLFRFAADVIQEKLLDELIASLFSGLFLPGQIWHPSSTICTRDPISLP
TTTLSPCPTLTNPILAALYAGDAIRCLAQIRFGREAVVQWLRYLVQEGMI
NFGGEKTWRRAIDGDKDGESDDLSDQGRCQARLLTSLAHGLWHASPFDFL
HGPAINNWKMETRDEITLKGLQNLMGNILSLRPPSVNDPHHPSGSCQLEV
THIQAKLPYFRWQFLLDLDIGPTLRAAFAADLTCTENRRVIDKAEVLLRF
LCFFVDSPSCTAEGVVDENIGACSSQDLFPIMLPVLEALLRANWREKGKT
GGAGGKLFLPALRVAFAVLRCPLAIDSERAANFTPFTAATPTLWHWAMRS
KLGGSGDSGTDIGRDVDVGCQDACHRNIALQRFAGLWGCLVGLLAVSPEY
MSGLEIQAPSYSQLHLITEEMWRLTAESHSIFAAVRAKNIYTLSRHVWGG
QEWHGKFSEGNSLLNFTCGDKIRTRTLEETKICEQLREFLCTGVDENGKD
SLADEGSAESNVTTWKKVRPWILGFRNRDGAP

Synonyms

Publications