Naga_100091g5, gene11 (gene) Nannochloropsis gaditana

Overview
NameNaga_100091g5
Unique Namegene11
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:30338..36733 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100091g5
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:30338..36733 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL000ngnoL000Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00090NO02G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna11rna11-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna12rna12-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna11rna11Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna12rna12Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna11

>rna11-protein ID=rna11-protein|Name=rna11|organism=Nannochloropsis gaditana|type=polypeptide|length=1000bp
MPTYSRHAERGGERGCRWVFFLPSYFCLYLLRHTFPHTLLDRHKAVSRLG
NHSVNRVKNRMRRKGGKRDSTMDGFLLPGAKSHYVPDLMIFPVHQDIHLD
LTQIPQKTLKGVVHITFACRSPTEGRKVVLDAVAFAELAVDSLDARFTLS
YRYDGKRVQVVWENPWRVGEQRRIRVLYTVVAPVAGMHFCGDAGDGKGPT
YILSDHETEKARYWLPCMDVPAVRTTASFFLTTRPEHLSFANGEWVDSEE
GAPGARPAWGQDTRTTCWRLDIPCPSYLLCVAAGALALFKEASEESKALL
PGCPIAYIAPVGVEERNVRLAFEPTARMLHWIANKVGNGTFPFPKYYQVM
GDAHESAMENISLVSWGLNWLMDETLLKEDRLVMNSINIHEIGHSYFGDC
LVIQHFEHAFLKESWATYIECCWLEDTEGQDAFLFQLYTDLRAYITEVED
DYARPIVTRTYNSSWSMYDDHLYPGGSCRLHMLRKLLGDQVFWQAVRAYV
DRNMHKVVETSDFRKCLEEVSGRSLVRFFEQWFYTPSFPQLRGEWEYDEE
TKVITLSIKQGEPEDSDHEEDDDEEICLFDIAFTIEVYNREGVLETTLRP
ALTRTTRKIVVQAKVSRSPCYLHVNPQLAAVLTLDMECEEEILAATARRA
TDLPSRIWAYEQLIEEVATPSAMAHVREHLPAEPFWGVRVAVADVLGDNP
SRASAQILGELLRAEKDPRALHHIAEACGAFRHPLLRDALLDVWTRQWDL
YRAKAEILTSLGSQNDVQDLELLLDICREHESSEGARNDPNLLETNIVGS
AHPVGKHNTMNAYEYLKTRLTDGGKREAQLSVRIVVVEAFARAASYVQDK
STREEAAEILAGLLMDEEQRTAETAAWALSEFLPLEAEYYRSELFSLRHR
LPVQEHFSLDRLLRDLDDENEEATPLQKLKKKMERWEDRVGAWEEALEEH
VADVDKHLLKNEGKGKGKVPSGRSRTPRGDESGSSEDKGSESESQRYWHN
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protein sequence of rna12

>rna12-protein ID=rna12-protein|Name=rna12|organism=Nannochloropsis gaditana|type=polypeptide|length=975bp
MPTYSRHAERGGERGCRHKAVSRLGNHSVNRVKNRMRRKGGKRDSTMDGF
LLPGAKSHYVPDLMIFPVHQDIHLDLTQIPQKTLKGVVHITFACRSPTEG
RKVVLDAVAFAELAVNSLDARFTLSYRYDGKRVQVVWENPWRVGEQRRIR
VLYTVVAPVAGMHFCGDAGDGKGPTYILSDHETEKARYWLPCMDVPAVRT
TASFFLTTRPEHLSFANGEWVDSEEGAPGARPAWGQDTRTTCWRLDIPCP
SYLLCVAAGALALFKEASEESKALLPGCPIAYIAPVGVEERNVRLAFEPT
ARMLHWIANKVGNGTFPFPKYYQVMGDAHESAMENISLVSWGLNWLMDET
LLKEDRLVMNSINIHEIGHSYFGDCLVIQHFEHAFLKESWATYIECCWLE
DTEGQDAFLFQLYTDLRAYITEVEDDYARPIVTRTYNSSWSMYDDHLYPG
GSCRLHMLRKLLGDQVFWQAVRAYVDRNMHKVVETSDFRKCLEEVSGRSL
VRFFEQWFYTPSFPQLRGEWEYDEETKVITLSIKQGEPEDSDHEEDDDEE
ICLFDIAFTIEVYNREGVLETTLRPALTRTTRKIVVQAKVSRSPCYLHVN
PQLAAVLTLDMECEEEILAATARRATDLPSRIWAYEQLIEEVATPSAMAH
VREHLPAEPFWGVRVAVADVLGDNPSRASAQILGELLRAEKDPRALHHIA
EACGAFRHPLLRDALLDVWTRQWDLYRAKAEILTSLGSQNDVQDLELLLD
ICREHESSEGARNDPNLLETNIVGSAHPVGKHNTMNAYEYLKTRLTDGGK
REAQLSVRIVVVEAFARAASYVQDKSTREEAAEILAGLLMDEEQRTAETA
AWALSEFLPLEAEYYRSELFSLRHRLPVQEHFSLDRLLRDLDDENEEATP
LQKLKKKMERWEDRVGAWEEALEEHVADVDKHLLKNEGKGKGKVPSGRSR
TPRGDESGSSEDKGSESESQRYWHN
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Synonyms
Publications