EWM20677.1, cds9995 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20677.1
Unique Name	cds9995
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037260.1:35683..35833 -
Alignment location	KK037260.1:35436..35512 -
Alignment location	KK037260.1:34997..35230 -
Alignment location	KK037260.1:34780..34890 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20677.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100760g2.4052.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:35683..35833 -
KK037260.1	supercontig	KK037260.1:35436..35512 -
KK037260.1	supercontig	KK037260.1:34997..35230 -
KK037260.1	supercontig	KK037260.1:34780..34890 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20677.1 vs. NCBI_GenBank
Match: gi|585100492|gb|EWM20677.1| (hypothetical protein Naga_100760g2 [Nannochloropsis gaditana])

HSP 1 Score: 390.193 bits (1001), Expect = 2.149e-137
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MSTGKNSPATKEEKITVSAAEMHGSFQSKLTATASPFIQRESQQSNMQSLGDSDLKRMVETAVRNRDVALLAAHCKMLSGRPGLASLQKNIQVHLERLQAEDLGIPLSSDIRGRAAKDEEPPRQLSNSLEGFPNCFLSSSVNLPASGIGQTDTPHSVALTLVPEVLEYLNAKNNDKSRLQDILQKSGCRM 190
            MSTGKNSPATKEEKITVSAAEMHGSFQSKLTATASPFIQRESQQSNMQSLGDSDLKRMVETAVRNRDVALLAAHCKMLSGRPGLASLQKNIQVHLERLQAEDLGIPLSSDIRGRAAKDEEPPRQLSNSLEGFPNCFLSSSVNLPASGIGQTDTPHSVALTLVPEVLEYLNAKNNDKSRLQDILQKSGCRM
Sbjct:    1 MSTGKNSPATKEEKITVSAAEMHGSFQSKLTATASPFIQRESQQSNMQSLGDSDLKRMVETAVRNRDVALLAAHCKMLSGRPGLASLQKNIQVHLERLQAEDLGIPLSSDIRGRAAKDEEPPRQLSNSLEGFPNCFLSSSVNLPASGIGQTDTPHSVALTLVPEVLEYLNAKNNDKSRLQDILQKSGCRM 190

The following BLAST results are available for this feature:

BLAST of EWM20677.1 vs. NCBI_GenBank

BLAST of EWM20677.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100492\|gb\|EWM20677.1\|	2.149e-137	100.00	hypothetical protein Naga_100760g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10026	rna10026	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications