EWM20713.1, cds9961 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20713.1
Unique Name	cds9961
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037259.1:70772..70815 -
Alignment location	KK037259.1:70391..70652 -
Alignment location	KK037259.1:70094..70301 -
Alignment location	KK037259.1:69933..69940 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20713.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101419g1.10434.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:70772..70815 -
KK037259.1	supercontig	KK037259.1:70391..70652 -
KK037259.1	supercontig	KK037259.1:70094..70301 -
KK037259.1	supercontig	KK037259.1:69933..69940 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20713.1 vs. NCBI_GenBank
Match: gi|585100556|gb|EWM20713.1| (hypothetical protein Naga_101419g1 [Nannochloropsis gaditana])

HSP 1 Score: 345.51 bits (885), Expect = 3.077e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0

Query:    1 MSETRHPVRRREGGSFLLHSLDVPRELASIGGIPTSPSASSSLSFFPSKSITHVSSTASHAKKSSESLGESRQGGRRKGGREGRGDLVRMDKSLSLSFSGVKEEDWESLDDSVRESKWENRTGEMLQLKRRRGYHRRSFLITASLVTPQNLGNHNLKKHRSHHLKQINEMRRA 173
            MSETRHPVRRREGGSFLLHSLDVPRELASIGGIPTSPSASSSLSFFPSKSITHVSSTASHAKKSSESLGESRQGGRRKGGREGRGDLVRMDKSLSLSFSGVKEEDWESLDDSVRESKWENRTGEMLQLKRRRGYHRRSFLITASLVTPQNLGNHNLKKHRSHHLKQINEMRRA
Sbjct:    1 MSETRHPVRRREGGSFLLHSLDVPRELASIGGIPTSPSASSSLSFFPSKSITHVSSTASHAKKSSESLGESRQGGRRKGGREGRGDLVRMDKSLSLSFSGVKEEDWESLDDSVRESKWENRTGEMLQLKRRRGYHRRSFLITASLVTPQNLGNHNLKKHRSHHLKQINEMRRA 173

The following BLAST results are available for this feature:

BLAST of EWM20713.1 vs. NCBI_GenBank

BLAST of EWM20713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100556\|gb\|EWM20713.1\|	3.077e-120	100.00	hypothetical protein Naga_101419g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9992	rna9992	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications