EWM20727.1, cds9946 (CDS) Nannochloropsis gaditana

Overview
NameEWM20727.1
Unique Namecds9946
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:38455..38612 +
Alignment locationKK037259.1:38801..39113 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20727.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102498g1.10130.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:38455..38612 +
KK037259.1supercontigKK037259.1:38801..39113 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20727.1 vs. NCBI_GenBank
Match: gi|585100580|gb|EWM20727.1| (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 317.39 bits (812), Expect = 1.328e-109
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MLASYTPYQEQQRQGYPLIPRCTATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGRRRGGRERGTGGGREGRGGRRGEGEEAGYMRAKRAI 156
            MLASYTPYQEQQRQGYPLIPRCTATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGRRRGGRERGTGGGREGRGGRRGEGEEAGYMRAKRAI
Sbjct:    1 MLASYTPYQEQQRQGYPLIPRCTATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGRRRGGRERGTGGGREGRGGRRGEGEEAGYMRAKRAI 156          
BLAST of EWM20727.1 vs. NCBI_GenBank
Match: gi|553178413|ref|XP_005852550.1| (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >gi|422295983|gb|EKU23282.1| hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6254 bits (161), Expect = 7.440e-10
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   26 ALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRF---VCNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGRR-RGGRERGTGG 132
             L  RL +D TAC +V RG   H   V CN RM++LF+   EI+GL+ QTG    AFW  F   V  E+LL+  A LV      G ++ ID ++ V  R  R GR   T G
Sbjct:  394 PLFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQG-RSSIDRIVGVTTRDGRWGRAMATLG 502          
BLAST of EWM20727.1 vs. NCBI_GenBank
Match: gi|585103505|gb|EWM22860.1| (hypothetical protein Naga_100988g2 [Nannochloropsis gaditana])

HSP 1 Score: 65.0846 bits (157), Expect = 1.887e-9
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
Query:   27 LAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRF---VCNESLLSLYAALVTLMLGYGSKTQIDVVLKVGGRR-RGGRERGTGG 132
            L  RL +D TAC +V RG   H   V CN RM++LF+   EI+GL+ QTG    AFW  F   V  E+LL+  A LV      G ++  D ++ V  R  R GR   T G
Sbjct:  373 LFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQG-RSSFDRIVGVTTRDGRKGRAMATLG 480          
BLAST of EWM20727.1 vs. NCBI_GenBank
Match: gi|585109633|gb|EWM27402.1| (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 63.1586 bits (152), Expect = 8.623e-9
Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 0
Query:   23 TATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLK 117
            + + L  +L  DE ACY+V+         V CN RM+ LF+ + E++GL  QT +   +FW RF+    L  L  A   +M+       +DV+L+
Sbjct:  394 SISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILE 488          
BLAST of EWM20727.1 vs. NCBI_GenBank
Match: gi|553186625|ref|XP_005854455.1| (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >gi|553187875|ref|XP_005854696.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294361|gb|EKU21661.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294601|gb|EKU21901.1| hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.1586 bits (152), Expect = 8.623e-9
Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 0
Query:   23 TATALAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLK 117
            + + L  +L  DE ACY+V+         V CN RM+ LF+ + E++GL  QT +   +FW RF+    L  L  A   +M+       +DV+L+
Sbjct:  394 SISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILE 488          
The following BLAST results are available for this feature:
BLAST of EWM20727.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585100580|gb|EWM20727.1|1.328e-109100.00hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
gi|553178413|ref|XP_005852550.1|7.440e-1041.44hypothetical protein NGA_0687300 [Nannochloropsis ... [more]
gi|585103505|gb|EWM22860.1|1.887e-940.91hypothetical protein Naga_100988g2 [Nannochloropsi... [more]
gi|585109633|gb|EWM27402.1|8.623e-932.63hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
gi|553186625|ref|XP_005854455.1|8.623e-932.63hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9977rna9977Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications