EWM20731.1, cds9942 (CDS) Nannochloropsis gaditana

Overview
NameEWM20731.1
Unique Namecds9942
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:20559..20666 -
Alignment locationKK037259.1:20184..20370 -
Alignment locationKK037259.1:19672..19985 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20731.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100261g8.1648.mrna
GbkeyCDS
End range.
End range20666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:20559..20666 -
KK037259.1supercontigKK037259.1:20184..20370 -
KK037259.1supercontigKK037259.1:19672..19985 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20731.1 vs. NCBI_GenBank
Match: gi|585100590|gb|EWM20731.1| (hypothetical protein Naga_100261g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 385.571 bits (989), Expect = 4.579e-135
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 
Query:    1 DKRSPSSPSSLPPSLPGPRPSRRSPALLKVSEVAVKGLLSLQRTCSLASSSSSSSSSSSSSLAFSPFYRWDILRELPSEEDVYEESGGEGRADGSGLRGDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNKQSMRRPKNG 202
            DKRSPSSPSSLPPSLPGPRPSRRSPALLKVSEVAVKGLLSLQRTCSLASSSSSSSSSSSSSLAFSPFYRWDILRELPSEEDVYEESGGEGRADGSGLRGDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNKQSMRRPKNG
Sbjct:    1 DKRSPSSPSSLPPSLPGPRPSRRSPALLKVSEVAVKGLLSLQRTCSLASSSSSSSSSSSSSLAFSPFYRWDILRELPSEEDVYEESGGEGRADGSGLRGDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNKQSMRRPKNG 202
[Close]
BLAST of EWM20731.1 vs. NCBI_GenBank
Match: gi|553194221|ref|XP_005855911.1| (hypothetical protein NGA_0556500, partial [Nannochloropsis gaditana CCMP526] >gi|422293155|gb|EKU20455.1| hypothetical protein NGA_0556500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.542 bits (545), Expect = 9.123e-68
Identity = 125/180 (69.44%), Postives = 126/180 (70.00%), Query Frame = 0 
Query:   62 LAFSPFYR--WD-----ILRELPSEEDVYEESGGEGRADGSGLR-----------------------------------------GDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNK 193
            L  SP  R  WD     +L  LPSEEDVYEESGGEGRADGSGLR                                         GDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNK
Sbjct:   10 LLLSPRARLSWDWLLVMLLTLLPSEEDVYEESGGEGRADGSGLRDDFANGFSTFLAPLHTPSPVLLLSLPSDTLFPLHSRFPLPPGDVLPSLLLVSPSPSFPPPSSPPYGPSACSPASLPWEEAREFNEVAEREARSLAKEKEGIRNAEEGQKEKEEQGKEVAQMRAGEEGRKGSRRQNK 189
The following BLAST results are available for this feature:
BLAST of EWM20731.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100590|gb|EWM20731.1|4.579e-135100.00hypothetical protein Naga_100261g8, partial [Nanno... [more]
gi|553194221|ref|XP_005855911.1|9.123e-6869.44hypothetical protein NGA_0556500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9973rna9973Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications