EWM20742.1, cds9932 (CDS) Nannochloropsis gaditana

Overview
NameEWM20742.1
Unique Namecds9932
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:117155..117188 -
Alignment locationKK037258.1:116914..116999 -
Alignment locationKK037258.1:116733..116825 -
Alignment locationKK037258.1:116459..116518 -
Alignment locationKK037258.1:116097..116273 -
Alignment locationKK037258.1:115927..115970 -
Alignment locationKK037258.1:115682..115859 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20742.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100249g8.5588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:117155..117188 -
KK037258.1supercontigKK037258.1:116914..116999 -
KK037258.1supercontigKK037258.1:116733..116825 -
KK037258.1supercontigKK037258.1:116459..116518 -
KK037258.1supercontigKK037258.1:116097..116273 -
KK037258.1supercontigKK037258.1:115927..115970 -
KK037258.1supercontigKK037258.1:115682..115859 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|585100604|gb|EWM20742.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 461.07 bits (1185), Expect = 2.501e-164
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MHDVDDHEDLTGATGLPRQLKVLDCKLRVLMDSCLSSSSQTADVEYVHSTLISELEAEHIVSIEDVFSVIQTFVPEEMLLSLGIEDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
            MHDVDDHEDLTGATGLPRQLKVLDCKLRVLMDSCLSSSSQTADVEYVHSTLISELEAEHIVSIEDVFSVIQTFVPEEMLLSLGIEDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR
Sbjct:    1 MHDVDDHEDLTGATGLPRQLKVLDCKLRVLMDSCLSSSSQTADVEYVHSTLISELEAEHIVSIEDVFSVIQTFVPEEMLLSLGIEDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|299472491|emb|CBN77276.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 118.627 bits (296), Expect = 1.804e-29
Identity = 59/107 (55.14%), Postives = 69/107 (64.49%), Query Frame = 0
Query:  117 SMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
            S+S    C LCER MPLTRHH+ P++ HK   K+G S   LN   AICRPCHSAVHR +D   LA  F TV  LLADE IG+FV WA KQR    +   N LL+Y+R
Sbjct:  118 SVSEPGCCSLCERLMPLTRHHVMPKSTHKRYRKKGYSDAVLNRTIAICRPCHSAVHRAHDALALAERFTTVEELLADETIGRFVAWARKQRTTSVQDSRNNLLRYRR 224          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|1004139554|gb|KXZ47559.1| (hypothetical protein GPECTOR_34g718 [Gonium pectorale])

HSP 1 Score: 118.627 bits (296), Expect = 1.885e-29
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 0
Query:   83 GIEDEDDIELFVSKVWLLLQK--ERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
            G+E  D++E F   +  L+    E  + E    E    +   GC +C R MPLT HHL PR +H    K+G+  ++LN    ICRPCHSA+HRTYDN+TLA ++YT+  LLA E + KFV WA KQ+        NP  +Y+R
Sbjct:   75 GVE-PDEVEGFADALHRLIVSAVESAVAELEGSEDDEQANIGGCAMCGRQMPLTFHHLIPRDVHDKYKKKGLGTEQLNAGIDICRPCHSAIHRTYDNKTLAAHYYTLHRLLASEPLQKFVAWARKQKVTTASDITNPRFRYRR 216          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|159472637|ref|XP_001694451.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158276675|gb|EDP02446.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 108.997 bits (271), Expect = 4.115e-27
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:  124 CELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
            C LC R MPLT HHL PR +H    ++ ++ +ELN    +CRPCHSA+HRTYDN+TLA ++ T+ ALL  E + KF+RWA KQ+   ++   NP  +Y+R
Sbjct:    1 CALCGRQMPLTFHHLIPRDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 100          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|1045914134|gb|OCH91230.1| (hypothetical protein OBBRIDRAFT_544041 [Obba rivulosa])

HSP 1 Score: 108.612 bits (270), Expect = 1.093e-25
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 0
Query:   52 ISELEAEHIVSIEDVFSVIQTFVPE---EMLLSLGIEDEDDIEL-FVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGM-SQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQR 207
            + E   E   ++ DV S+    VP    + L+S GI D+ D  L F+ K       + +        V S +R + CE+CER +PLT HHL PR +H  +LK+G   Q  LN  A +CRPCHSAVH+   NE LA +FYTV  LL  E I K+ ++A+KQR
Sbjct:   57 VREATYESRANVPDVESLSLDAVPASFADTLISCGIADDSDAALSFLRKA----LADYIADAAAPPPVWSKTRATECEICEREIPLTYHHLIPRQVHAKVLKKGWHPQAMLNSVAWLCRPCHSAVHQVASNEVLARSFYTVELLLEREDIQKWRKYAAKQR 213          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|630358097|ref|XP_007868349.1| (hypothetical protein GLOTRDRAFT_79058 [Gloeophyllum trabeum ATCC 11539] >gi|521722680|gb|EPQ53041.1| hypothetical protein GLOTRDRAFT_79058 [Gloeophyllum trabeum ATCC 11539])

HSP 1 Score: 106.686 bits (265), Expect = 6.004e-25
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   72 TFVPEEMLLSLGI-EDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMH-KILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQR 207
            TFV  E L+S GI  D+D    ++ KV L   KE          V S +R   CELC R +PLT HHL PR+ H K L K+   QD LN  A +CRPCHSAVHR   NE LA ++YT+  LL  E I K+ ++ASKQR
Sbjct:   83 TFV--ETLVSYGICSDDDSAVRWLRKVLLDYVKETCAPPP----VWSTTRTKECELCGREVPLTYHHLIPRSTHAKALKKKWHPQDMLNSVAWLCRPCHSAVHRAASNEDLARSYYTLELLLEREDIQKWAKYASKQR 214          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|527299402|gb|EPT00204.1| (hypothetical protein FOMPIDRAFT_61440 [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 106.301 bits (264), Expect = 8.667e-25
Identity = 64/142 (45.07%), Postives = 84/142 (59.15%), Query Frame = 0
Query:   68 SVIQTFVPEEMLLSLGIEDE-DDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMH-KILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQR 207
            +V   FV  + L+S GI D+ DD+  F+ KV      + + + T    V S +R S CE+CER +P+T HHL PR +H K L K   S+  LN  A +CRPCHS VHR  +NE LA  FYTV  LL  E I K+ ++ SKQR
Sbjct:   77 TVPTAFV--DTLISCGIADDVDDVVAFLRKV----LADYIEEVTAPPPVWSKTRTSECEICEREVPVTYHHLIPREVHTKALKKNWHSEGMLNSVAWLCRPCHSTVHRVANNEELAKQFYTVDRLLEREDIQKWRKYISKQR 212          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|1000777709|gb|KXN68992.1| (hypothetical protein CONCODRAFT_79537 [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 105.531 bits (262), Expect = 1.561e-24
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 0
Query:   86 DEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQG-MSQDELNICAA-ICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPL 218
            +E ++ELF   +   L+   +  E   +E      +  CELCER MPLT HHL PR  H  L K+G  ++D++      ICRPCH+ +HRTYDN  LAIN+ TV  LL  EK+ KF+ + SKQ+ R +  G  PL
Sbjct:   70 NESELELFSITLSRRLKDNLIFGEVPVEE----EDKGSCELCEREMPLTFHHLIPRETHSHLAKKGTFTKDDMRTRGTNICRPCHTHLHRTYDNLELAINYNTVEKLLESEKVCKFIEYISKQKIRSRVRGAVPL 200          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|646393724|gb|KDQ58181.1| (hypothetical protein JAAARDRAFT_57926 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 104.76 bits (260), Expect = 4.262e-24
Identity = 66/145 (45.52%), Postives = 88/145 (60.69%), Query Frame = 0
Query:   72 TFVPEEMLLSLG-IEDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDE-LNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMG 214
            TF+  + L+S G + D DD+  FV KV     KE      T+    S +R+S CE+CERA+PLT HHL PR++H  +LK+G  ++E L   A +CR CHS VH    NE LA NFYTV  LL  E I K+  +A+KQR R ++ G
Sbjct:   80 TFI--DSLISYGLVGDSDDVIKFVEKVLDDYVKEACEPPPTN---WSGTRKSECEICERAVPLTYHHLIPRSVHTKVLKKGWHREEMLGSVAWLCRHCHSTVHHVASNEELARNFYTVDLLLEREDIQKWRNYAAKQR-RGKRRG 218          
BLAST of EWM20742.1 vs. NCBI_GenBank
Match: gi|1023233346|gb|KZT30127.1| (hypothetical protein NEOLEDRAFT_1160105 [Neolentinus lepideus HHB14362 ss-1])

HSP 1 Score: 104.375 bits (259), Expect = 4.708e-24
Identity = 76/198 (38.38%), Postives = 104/198 (52.53%), Query Frame = 0
Query:   29 VLMDSCLSSSSQTAD------VEYVHS----TLISELEAEHIVSIEDVFSV----IQTFVPE---EMLLSLGI-EDEDDIELFVSKVWLLLQKERVIQETTDDEVMSMSRESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDE-LNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQR 207
            +LMD  L+SS +TA       V Y+ S     L  EL      ++ +V  +    ++   P    E LLS GI   +DD    + KV     ++ V +      + S +R   CELC R +PLT HHL PR+ H  +LK+    +E LN  A +CRPCHSAVHR   NE LA ++YT+  LL  E I K+ R+ASKQR
Sbjct:   16 LLMDPELTSSEETAASELDDFVSYLSSEIWPCLPKELRNASYSTLANVPGIDEFALEELTPPTVIESLLSYGICSGDDDAFRLLRKV----LQDYVKELCAPPPIWSATRAKECELCGREVPLTYHHLIPRSTHAKVLKRKWHPEEMLNSVAWLCRPCHSAVHRVASNEDLARSYYTLDLLLEREDIQKWTRYASKQR 209          
The following BLAST results are available for this feature:
BLAST of EWM20742.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100604|gb|EWM20742.1|2.501e-164100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|299472491|emb|CBN77276.1|1.804e-2955.14conserved unknown protein [Ectocarpus siliculosus][more]
gi|1004139554|gb|KXZ47559.1|1.885e-2942.66hypothetical protein GPECTOR_34g718 [Gonium pector... [more]
gi|159472637|ref|XP_001694451.1|4.115e-2749.00predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|1045914134|gb|OCH91230.1|1.093e-2540.99hypothetical protein OBBRIDRAFT_544041 [Obba rivul... [more]
gi|630358097|ref|XP_007868349.1|6.004e-2547.83hypothetical protein GLOTRDRAFT_79058 [Gloeophyllu... [more]
gi|527299402|gb|EPT00204.1|8.667e-2545.07hypothetical protein FOMPIDRAFT_61440 [Fomitopsis ... [more]
gi|1000777709|gb|KXN68992.1|1.561e-2442.96hypothetical protein CONCODRAFT_79537 [Conidiobolu... [more]
gi|646393724|gb|KDQ58181.1|4.262e-2445.52hypothetical protein JAAARDRAFT_57926 [Jaapia argi... [more]
gi|1023233346|gb|KZT30127.1|4.708e-2438.38hypothetical protein NEOLEDRAFT_1160105 [Neolentin... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9963rna9963Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications